Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g3221 ATGGGATCCAGCaaagaaaacaaagataaaAACAAGCCTACCATCACTAAGCATACAGGGGTAAACAGATCTAACAGAGAACAAGGAATCCACGAGGAACAAACCGACGGTAGACCTCGGGAGATGTTCGCCTTCAAGCTTATCCCTGAACCCTCCTTGAAGCACAGTGTTGAGCCATGTTCAGAACATTGTAAGAAGCCAATGGGAATTCGAAGAAAAACTCCTTCTCAGCTTCAGGCCCTTGATAATATCTATACAGAGGAGAAGTATCCAACACAGAGAGCAATTGAAGGCTATGCAGCTGCTTTGGGGTTGACATATAAGCAAGTTCAAGATTGGTTTGTTgagaaaaggaggagggagaagagaaaaaATGGAGTGTTTAAatcatcatgttcttctttGGGTAAGAAACTACCAATTCACTGTGGAAAAGATGTCTTGGGTGTTTCTGTTGCTAGAAAGATACTCGAAACAGGTCTGTCAAATCAGAGAACTAATGGTCCTTTGTCATCAAGATACAATCCGTCAGTAACCAGAAATgctacaaaaaagaaaaagcataaATGTCTTCAGGAGTTGTTTACAGCAGACCACATTCTACAGAAGTTTTTTCGGAAGGATGGTCCTCCTCTTGGTGAGGAATTTGATTCTCTTCCTCCAGGTGCATTCCTCCACCATACTGGTCTCGAAAATTTTACTCCTGGCAGTCAAGATGACCAAGGACCAATGAAAAGGAGGAAGGTTTCCAAGAGTGCAATTGGAAGTGGCCCAGGTTCTAGTAAGAAAGCACCAATTGGAAAACATGGTATTGGCAAAGGTTTGATGACAGTATGGAGGGCAACAAATCCTGATGCCGGAGATGTTCCAATTGGGTTTGGTAACAGAGAAGTTTCTCTAATCTCAAAAGCTAAGCAGCATAAACCAGAGTGTGAGAACAAGAAGCCACGCAAAACATTAACAATGACTggaaagacaaaaaataaattacagaaTGATAGAAAAAAATTGCAAGAAAAGAGGAAGCTTTTCATGCAAAGAAGATTGGAAAAGTCCAACCAAGATGTCAGTCAGAAGCAATCACAGAAGGAAAAATGTGAACTTGTTTTGGATAGAGCAATGCTCGAGGAGGAACTTAGTCGAATTTCGGTGCTAATTGACGATGAAGAGCTAGAGATTAGAGAGTTACAAGCAGGACCAGATTTGCTTGTTTGTTCTGATCATCTTGCTGCCAGTAAAATTCATGGTTGCTCACTTTGTAAAGATGTGCTGCCTAAGTTCCCTCCAGATACTGTTAAGATGAAAAAACCCATCTGTTTGCAACCTTGGGACTCCTCTCCCAAAATTGTCAAGAAACTTTTTAAGGTATTGCATTTTCTTTATACATATGCTATTGTTGTCGATATATGCCCCTTCACTCTTGATGAGTTTGCTCAAGCATTTCACGATaagGATTCAATGCTACTTGGTAGGATTCATGTGGCCCTTCTCACACTTCTTCTGTCTGACATTGAAGTGGAGCTTACTAGCCGATTTCCCCCTCATTTAAATAAGTCATGCAATTATCTTGCATTGCTTCATTCGgTGGAAAATCAAGAATATTCTCTGGACTTCTGGAAAAGATCTCTTAATCCTCTTACATGGATAGAAATACTCCGACAAGTTTTGGTCGCTGCTGGCTTTGGTTCAAAGCAAGGTGCTTTGCGAAGAGAAGCCCTTAGCAAGGAACTGAATCTCCTAGTAAACTATGGCCTACGGGCTGGCACCTTGAAGGGCGAGTTGTTTAAAATCTTGTCAGAGCAAGGAATTAACGGTTCAAAAGTATCTGAACTGGCAAAGTTAATGCAGATTGTTGAATTGAACCTTGCTAGCACAACAGAGGAACTGGAGTCTTTAATATGTTCAACACTTTCAAGTGATATTACCTTGTTTGAAAAGATTTCGTCATCTGCATTTAGACTGCGAATGAGCTCTTTTAGTAAGGACATTGATGAGTTTCAGTCAGATACGGAGGACTCTGGAAGTGTTGATGATGAACTTAATGACAGTAATACATGTTGCAGTGGTGATGATTTTGAAAGTGATTCAGGGAACTCCAATTTAAGAAATTCGAAGCATGCAaacaattacaaattaaaaaataaaatggttaCTGTATCCACTGAAATTGATGAGAGCCATCCAGGAGAAGTGTGGCTGTTAGGACTGATGGAGAGTGAATATTCAGATTTGAGCATTGAAGAAAAGTTGAATGCGTTAGTGGCTCTAACTGATCTTCTTTCATCTGGTTCCAGCATTAGGATGAAGGATCCAACAAAAGTTACAGCTGATTATAGTTCTAGCATCCAATTACGTGGTTCAGGAGCAAAAATCAAGAGGTCATTAGTAAAGAAGCCTGTGTCATATTGGAACCAGATTGGACTAATACAAAATGTTAAAGAAGGGTCCTCATCATTGAATCCTCACTCCTGTCCAGTGGATTCCTCATTATTAATCTCAAATATCTACACTCATGAGGAATCCTCCGAGAAGGGAAAAGAAGCAAAAGAAACAGGTTCAACTGATTCACATCCCATTCAATCAGTGTTTTTGGGATCTGATCGTCGATACAATAGATACTGGCTTTTCTTAGGCCCTTGTAATGTGGATGATCCTGGCCACAGGAGAGTTTATTTTGAATCTTCCGAAGATGGTCACTGGGAAGTGATTGATACTGAAGAGGCATTGTGTGCCTTGTTGTCCGTTTTGGATGATAGAGGCAAACGGGAGGCACTTCTTATTGAATCTTTGGAGAAGCGGAAAGAATCTCTTTGCAGCAGGATTAGGGCCAGTTGTACTGGAACGTATCGTATGTCATCTTCTGATCAATCTGAGCTTGATATGACCACAGAGGACAGTTATTCTCCAGTATCTGATGTAGACAACCAGAGCCTGAGTGAGAATGCAAAAGAACCTCTGCCTTCAGCTGGGGCTGTGGTAATTGAAGCTGGGAAGAAGGGTGCAGAACAAGTACAAAAATGGATTCGTCTTCAAGCATATGATTCATGGATGTGGAATTCCTTTTATTTAAATCTCAATGTTGTGAAATATGGTAGAAGGTCTTATATTGATTCTCTGGCTAGATGTGAGAGCTGTCATGATCTATACTGGAGAGACGAGAGACACTGTAAGATTTGCCATATGACATTTGAGCTTGATTTTGATCTTGAAGAAAGATATGCAATCCACACAGCCACATGCAGGGAGAAAGATGACAGCAATAAATTTCCAAATCACAAAGTCTTATCATCACAGATCCAATCACTGAAAGCTGCAATCTATGCTATTGAGTCTGTTATGCCTGTAGATGCCCTAGTAGGTGCTTGGAGGAAGTCAGCTCATAAGCTATGGGTCAGACGTCTCAGACGCACCTCAACTTTAGTTGAGCTGTTACAGGTTGTTGCTGATTTTGTTGGTGCTATAAACGAGGATTGGTTGTTTCACTGCAATTTTCCAGATGGAGCTGTTGATAAAATCATTACATCATTTGCGTTTTTGCCCCATACATCGTCAGCTTTTGCTCTATGGTTAGTGAAATTGGATGCCATAATTGCTCCCTACCTGGACAGAGTGCAGCCTCCCAAGAAGCAGGAAATCAGTAAGAGGTAA 3648 0.3961 MGSSKENKDKNKPTITKHTGVNRSNREQGIHEEQTDGRPREMFAFKLIPEPSLKHSVEPCSEHCKKPMGIRRKTPSQLQALDNIYTEEKYPTQRAIEGYAAALGLTYKQVQDWFVEKRRREKRKNGVFKSSCSSLGKKLPIHCGKDVLGVSVARKILETGLSNQRTNGPLSSRYNPSVTRNATKKKKHKCLQELFTADHILQKFFRKDGPPLGEEFDSLPPGAFLHHTGLENFTPGSQDDQGPMKRRKVSKSAIGSGPGSSKKAPIGKHGIGKGLMTVWRATNPDAGDVPIGFGNREVSLISKAKQHKPECENKKPRKTLTMTGKTKNKLQNDRKKLQEKRKLFMQRRLEKSNQDVSQKQSQKEKCELVLDRAMLEEELSRISVLIDDEELEIRELQAGPDLLVCSDHLAASKIHGCSLCKDVLPKFPPDTVKMKKPICLQPWDSSPKIVKKLFKVLHFLYTYAIVVDICPFTLDEFAQAFHDKDSMLLGRIHVALLTLLLSDIEVELTSRFPPHLNKSCNYLALLHSVENQEYSLDFWKRSLNPLTWIEILRQVLVAAGFGSKQGALRREALSKELNLLVNYGLRAGTLKGELFKILSEQGINGSKVSELAKLMQIVELNLASTTEELESLICSTLSSDITLFEKISSSAFRLRMSSFSKDIDEFQSDTEDSGSVDDELNDSNTCCSGDDFESDSGNSNLRNSKHANNYKLKNKMVTVSTEIDESHPGEVWLLGLMESEYSDLSIEEKLNALVALTDLLSSGSSIRMKDPTKVTADYSSSIQLRGSGAKIKRSLVKKPVSYWNQIGLIQNVKEGSSSLNPHSCPVDSSLLISNIYTHEESSEKGKEAKETGSTDSHPIQSVFLGSDRRYNRYWLFLGPCNVDDPGHRRVYFESSEDGHWEVIDTEEALCALLSVLDDRGKREALLIESLEKRKESLCSRIRASCTGTYRMSSSDQSELDMTTEDSYSPVSDVDNQSLSENAKEPLPSAGAVVIEAGKKGAEQVQKWIRLQAYDSWMWNSFYLNLNVVKYGRRSYIDSLARCESCHDLYWRDERHCKICHMTFELDFDLEERYAIHTATCREKDDSNKFPNHKVLSSQIQSLKAAIYAIESVMPVDALVGAWRKSAHKLWVRRLRRTSTLVELLQVVADFVGAINEDWLFHCNFPDGAVDKIITSFAFLPHTSSAFALWLVKLDAIIAPYLDRVQPPKKQEISKR 1215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g3221 1215 MobiDBLite consensus disorder prediction 841 860 - -
Sto10g3221 1215 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 860 934 IPR028941 -
Sto10g3221 1215 MobiDBLite consensus disorder prediction 162 179 - -
Sto10g3221 1215 MobiDBLite consensus disorder prediction 951 983 - -
Sto10g3221 1215 MobiDBLite consensus disorder prediction 227 269 - -
Sto10g3221 1215 SUPERFAMILY Homeodomain-like 57 125 IPR009057 -
Sto10g3221 1215 Pfam Homeodomain 73 123 IPR001356 GO:0003677
Sto10g3221 1215 ProSiteProfiles DDT domain profile. 447 506 IPR018501 -
Sto10g3221 1215 Pfam DDT domain 450 503 IPR018501 -
Sto10g3221 1215 MobiDBLite consensus disorder prediction 1 16 - -
Sto10g3221 1215 SMART testlast3 447 506 IPR018501 -
Sto10g3221 1215 MobiDBLite consensus disorder prediction 1 38 - -
Sto10g3221 1215 Gene3D - 61 134 - -
Sto10g3221 1215 MobiDBLite consensus disorder prediction 24 38 - -
Sto10g3221 1215 ProSiteProfiles 'Homeobox' domain profile. 74 124 IPR001356 GO:0003677
Sto10g3221 1215 MobiDBLite consensus disorder prediction 162 185 - -
Sto10g3221 1215 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 65 1207 IPR044977 GO:0006357
Sto10g3221 1215 SMART HOX_1 67 128 IPR001356 GO:0003677
Sto10g3221 1215 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 728 767 IPR028942 -
Sto10g3221 1215 PANTHER OS07G0619600 PROTEIN 65 1207 - -
Sto10g3221 1215 Coils Coil 320 347 - -
Sto10g3221 1215 CDD homeodomain 71 125 IPR001356 GO:0003677
Sto10g3221 1215 Coils Coil 372 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g3221 Sto-Chr10 41338482 41355747 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g3221 73 224 Homeobox Transcription Factor Family AT1G28420 32.941 1.16e-11 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Sto10g3221 WSD 1.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g3221 - - aprc:113853612 1546.56