Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g3189 ATGCCTGACACATCTGACGTCTCGTCTGGCTCCAGTAGCGCCGCCGCTACTTCACCTAAAACATGTGCTCCTTTTAATAGCACGAGCTCATCGTCTGCTATAAAGCTTGACAAGAACAATTATCTACTGTGGAAGGCCACTATCATGCCACAACTCATCGGAAATTGTCTGGAGACACACGTTGATGGCACTGGCTCCATTCCGGCGAAATATGTCGGACAAGGTGAAACACGCCAACCGAATCCTGCTTACCGAGAGTGGAGAAATCAGacagagaaagaggaagaatgCATCATCCCATTTCAAATTCCGAAAAGCAAAGAAAATGTAGAGCTTGAGAGTGATGATAACGGATCTAATCCTTCTTCCTCACAGTCACAGAAATCGAGTTCTCAACGTTCACATGGCCCAACGGATCTATTTCACAGTAATGAGGCACGTGAGTTCTCAACTTCAACCCCAGCACGTGATTTCTCGAGTAACTCACGTGGAATATCACTTCAAAGTCAAAATCTGTCTCAACCGAGTCCGATATGTGAGCCAGCCCATTCTTCATCTCACATAAGCCCGTCTCATGAACACTCGGCTGAAGCCCAATCACATTCACCGGCAGCCCAAGTCACTAAACACAGTATGAGCTTCATTCGGAGATTGAATGATACGTTTGCCCTGAAAGATTTGGGTCCCGTATTTTACTTCTTGGGTATTGAGGTGCACAGAGATGAATCGGGGTTCCACTTGTGCCAAGCAAAGTACACACTTGATGTATTGAAACGGTTTGAGATGTCTACATGTGCCCCTGTTTCAACACCTATGGTAGTAGGGAGATCGTTTACAGCTAAGGATGTTTATAAACGCCCCTCACCTTGCCGGACTTTCTGTAAACATCCAAAATCCACAATCATGATGCTTGGGGAGCCCCATCGCTCAAATCCAACCGTCCACGTTCCTCCTTGGCCTCTCAACCTCGATAATTCAACGCCTGAGATCTATTCCCCTTACCCTCTCTCCGACGccaatgccagcaccggagatTACTCGCCCATCTACATGCAAGACGCACTCACGGCGCTCCAGCGTTATCTCCCGTCTAACGACGCCGATATCGACTCCGACCCCGAGATTCTGGGTCGGGATTCTGATGCTCCGGTGGATGCCTACTCCTGCGACCATTTCCGCATGTACGAGTTCAAGGTTAGGAGGTGCGCACGTGGCAGGTCACATGACTGGACTGAATGTCCCTACGCTCATCCCGGCGAGAAGGCTCGCCGGAGGGATCCACGCAAGTTTCACTATTCCGGTGCCGCATGCCCTGAATTTCGTAAAGGGAGCTGCAAGAAGGGGGATGCGTGTGAGTTCGCTCACGGGGTGTTTGAGTGTTGGCTTCACCCGGCTCGTTACCGTACGCAGCCGTGCAAAGACGGGACGAGCTGCCGGAGAAGGGTGTGCTTCTTTGCTCACACCCCGGAGCAACTTAGGGTTCTGCCTCAGCAGAGTCCGAGGAGTGCAAACTCGGTCGATTCTTACGATGGCTCTCCTCTAAGGCAGGCGATGGAGTCTTGCTTTGCTAAAATTTCACCTCCGGGTACGCCTCCGTCCGAGTCGCCTCCTCTGTCTCCGATGGCACGCTCTCTGGGCTCCAGCTCCATCAACGAGATGGTGGCTTCTCTGCGAAATTTGCAGCTGGGAAAAGGGAAGTCGTTGTCGTCTTCTTGGAATGTTGCTAATGCTCCCTGTTTCGGATCTCCAAGGGGATCCATGCTCCGACCCGGATTCTGTAGCCTCCCCACTACTCCTACACAGGCACCTAGTCGTGGAAGTCCCAACTGTTTTGATATTTGGGAACAGGGCTACGAGGAGGAGCCTGCGATGGAGAGGGTGGAGTCAGGAAGGGACATCAGAGCAAAGATGTTTGAGAAATTGAGTAAAGAGAATTCTCTGGAGAGATCGGGGGCGGGTGCATCGGGTGGAGCTCCGGATGTTGGATGGGTTTCAGAGCTGGTCAAGTAA 2010 0.5045 MPDTSDVSSGSSSAAATSPKTCAPFNSTSSSSAIKLDKNNYLLWKATIMPQLIGNCLETHVDGTGSIPAKYVGQGETRQPNPAYREWRNQTEKEEECIIPFQIPKSKENVELESDDNGSNPSSSQSQKSSSQRSHGPTDLFHSNEAREFSTSTPARDFSSNSRGISLQSQNLSQPSPICEPAHSSSHISPSHEHSAEAQSHSPAAQVTKHSMSFIRRLNDTFALKDLGPVFYFLGIEVHRDESGFHLCQAKYTLDVLKRFEMSTCAPVSTPMVVGRSFTAKDVYKRPSPCRTFCKHPKSTIMMLGEPHRSNPTVHVPPWPLNLDNSTPEIYSPYPLSDANASTGDYSPIYMQDALTALQRYLPSNDADIDSDPEILGRDSDAPVDAYSCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGAACPEFRKGSCKKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSANSVDSYDGSPLRQAMESCFAKISPPGTPPSESPPLSPMARSLGSSSINEMVASLRNLQLGKGKSLSSSWNVANAPCFGSPRGSMLRPGFCSLPTTPTQAPSRGSPNCFDIWEQGYEEEPAMERVESGRDIRAKMFEKLSKENSLERSGAGASGGAPDVGWVSELVK 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g3189 669 MobiDBLite consensus disorder prediction 1 30 - -
Sto10g3189 669 MobiDBLite consensus disorder prediction 644 669 - -
Sto10g3189 669 Gene3D - 426 502 - -
Sto10g3189 669 PANTHER UNKEMPT FAMILY MEMBER 308 669 IPR045234 -
Sto10g3189 669 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 435 456 IPR000571 GO:0046872
Sto10g3189 669 MobiDBLite consensus disorder prediction 115 207 - -
Sto10g3189 669 ProSiteProfiles Zinc finger C3H1-type profile. 432 458 IPR000571 GO:0046872
Sto10g3189 669 SMART c3hfinal6 466 489 IPR000571 GO:0046872
Sto10g3189 669 SMART c3hfinal6 431 457 IPR000571 GO:0046872
Sto10g3189 669 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 308 669 - -
Sto10g3189 669 MobiDBLite consensus disorder prediction 101 207 - -
Sto10g3189 669 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 214 272 IPR013103 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g3189 Sto-Chr10 41148004 41155636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g3189 387 540 C2H2 Transcription Factor Family AT5G12850 58.125 8.59e-55 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto10g3189 RVT_2 1.7e-10 CL0027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g3189 - - aprc:113867365 588.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g3189 10 41148004 41155636 Sto10g3189 10 41148004 41155636 ECH