Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g3181 atggaaaacaCTAAGATGATGAGCAGCAATAATATTATGAGGAGCAGTGATCTGATCATAGATTCGAAGCTGGAACAACATCAATTGTGTGCATCCAAACACTGCCCAGGATGCGGACACAAGTTTCAACCCAACACGGTGCAGGAGTGGGTGGGAGTACCAGCGGGAGTGAAGTTTGATCCAACAGACCAAGAGCTAATACAACACCTTGAAGCGAAAGTGGAGTCAATTAAGCACAATAAGTCTGTGTCTGTGTCTCACCCTTTGATTGATGAGTTCATTCCCACAATTGAAGGAGAGGATGGGATTTGCTATACTCACCCAGACAAGCTTCCAGGAGTCAGGAGAGATGGGTTGAGCAGGCACTTCTTCCACAGGCCATCCAAGGCATACACAACAGGAacaaggaagagaaggaagattATCCAAATCCAAAGTACTAGTAGTACTAGTAACAGTACTAGTACTAGTAGTAGTGATCATCAGATGGAGATGGGATTGGGATCAGCAGGAGAAACAAGATGGCACAAGACAGGAAAAACCAGAGGCGTGGTGGTGAATGGGAAGCAAAAGGGATGCAAGAAGATTCTAGTGCTGTACACAAACTTTGGGAAGAACAGGAAGCCAGAGAAGACAAACTGGGTGATGCATCAGTACCACTTGGGAGAGcaggaggaagagaaagaaggagagcTGGTGGTGTCCAAGATCTTCTATCAGACACAGCCCAGACAGTGCAATACTAATAATGAGAGAATAAGCTGTGCAACTGCAAGTGATCAGCAGCagcataataatattattacaaCTAGAAGAGAGACTTGTTCTTCTAAGCAAATACTATTACTCTCTAATAATGCAGATCATCATGTGTCAAATAATAATGTTGTTGGAGTTCCTACTCCTCCATTCACTAATTCCACATATACTGCCTTCGACAACATTAATCAACACCTTAAGTCCGACCATTTCACCTTCATTCCATTCACCAAAACTTTCCACCAGGTGGGAATAGGAGATGGTTGGAGAGGAAGAGAAGCATCAAGCGAAGAAGTAGAAGTAAATGATGAGATTGCAACCACAGCAACAGCATTCCATATAAGTAGGCCTATTTCTACCATTATCGCTCAACCTCCTATTCCTAATTCCATCATCCTCGACGATGTCTCTACATTCATGCTCCACAATAATGATCATCATTTCCAgGAGTCAACCATTTCAACTACTCCACAAGAAGCAGAATGGTTCAAGTATTCTTCATATTGGCCTGATCCTGACAATCCAGggttagggtttcttgGTATACAGAGATTTGGTCCCATAAAGAAGTCGCAGGAAGAATGGTGTGGCGTTGACTCAGAATGGAGAAGTTTTCGCGTAGAATATGATACTTCTGATCTGACTAGAAAGCCTGTGAAAAAATCTCCCAATCTCACATCCATGGCACGTGCCTCCGAAACAGGCAGCCGCCGGCTTACCGGTACACTACCACCAGAAACTTTTAAGGATGCAAAAAGGCAAGATAGTCTCGCTATCATATGCTTAGACTTCATCTTTGGCACTTTTGGGACAATGGCCAAATCCACATCAGCATCACATGTGCTATGGTAA 1611 0.4128 MENTKMMSSNNIMRSSDLIIDSKLEQHQLCASKHCPGCGHKFQPNTVQEWVGVPAGVKFDPTDQELIQHLEAKVESIKHNKSVSVSHPLIDEFIPTIEGEDGICYTHPDKLPGVRRDGLSRHFFHRPSKAYTTGTRKRRKIIQIQSTSSTSNSTSTSSSDHQMEMGLGSAGETRWHKTGKTRGVVVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGEQEEEKEGELVVSKIFYQTQPRQCNTNNERISCATASDQQQHNNIITTRRETCSSKQILLLSNNADHHVSNNNVVGVPTPPFTNSTYTAFDNINQHLKSDHFTFIPFTKTFHQVGIGDGWRGREASSEEVEVNDEIATTATAFHISRPISTIIAQPPIPNSIILDDVSTFMLHNNDHHFQESTISTTPQEAEWFKYSSYWPDPDNPGLGFLGIQRFGPIKKSQEEWCGVDSEWRSFRVEYDTSDLTRKPVKKSPNLTSMARASETGSRRLTGTLPPETFKDAKRQDSLAIICLDFIFGTFGTMAKSTSASHVLW 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g3181 536 Gene3D NAC domain 62 244 IPR036093 GO:0003677|GO:0006355
Sto10g3181 536 MobiDBLite consensus disorder prediction 471 494 - -
Sto10g3181 536 ProSiteProfiles NAC domain profile. 53 240 IPR003441 GO:0003677|GO:0006355
Sto10g3181 536 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 13 400 IPR044799 GO:0003700
Sto10g3181 536 MobiDBLite consensus disorder prediction 471 500 - -
Sto10g3181 536 PANTHER NAC DOMAIN-CONTAINING PROTEIN 75 13 400 - -
Sto10g3181 536 Pfam No apical meristem (NAM) protein 54 221 IPR003441 GO:0003677|GO:0006355
Sto10g3181 536 MobiDBLite consensus disorder prediction 143 164 - -
Sto10g3181 536 MobiDBLite consensus disorder prediction 143 174 - -
Sto10g3181 536 SUPERFAMILY NAC domain 45 240 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g3181 Sto-Chr10 41092311 41098863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g3181 19 366 NAC Transcription Factor Family AT5G56620 53.977 4.70e-117 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sto10g3181 NAM 9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g3181 - - gmx:100791884 440.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g3181 10 41092311 41098863 Sto10g3181 10 41092311 41098863 ECH