Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g3180 ATGGAGAAGAGTAAGAAGATTCTTGGTTTTCTTATCCTTCTCCTCCATTTAACTCCAGCAAAATCAGCCATTGGTAGTATTGGAGGTGGGACTAACAGTCCAGAGCCATCTGGATCTTCTATGTCAAAGATGGAAACAGCTTACACAAGTCTTCAGGCATGGAAATCAGCCATTACTGATGACCCATTAAGGATTTTAGACAGTTGGGTGGGTTCTAATGTGTGTTCTTATAAAGGAGTGTTCTGTGCATCATCAGGTTCAGGTGGTGGTGTTGTTGTTGCAGGAATAGATCTCAACCATGCAAATCTTCAAGGAAGTCTAGTAAAAGAGCTATCTTTGCTCACTGATATGTCTCTTCTCCATCTCAATAGCAACAGATTTACAGGTACAGTACCTGATACATTCAAAGACCTCTTGTTTCTTGAAGAGTTAGACCTCAGCAACAACCTTCTCTCAGGTGATTTCCCTGCAGTTACTTTGTACATGCCAACCCTCATTTACTTAGACCTCAGATTCAACTCCTTCTCTGGATCAATACCTGAAGAGCTTTTTTATAAGAATCTGGACGCAATATTCCTGAATGACAATCAATTCGAAGGTGAAATCCCCCAGAGTTTGGGGAATTCCCCTGCTTCTGTGATAAACTTGGCTAACAATAAGTTCAGTGGAAGCATCCCTGCAAGTATGGGATTCATGGGGTCTAAGCTGAGGGAAATTCTGTTCTTGAATAACCAGATATCAGGTTGTATTCCTGAAGGAGTGGGGTTGTTCACAGATATTCAGGTTTTGGATGTGAGCTTCAATTCACTGATGGGTCATTTGCCAGACACGCTTTCATGTCTGCAAGATATACAAGTGCTGAATTTGGGGCATAATAAGCTTTCTGGGGAATTGCCAGATGTGGTGTGTTCTCTGAGAAGTTTGATGAATCTGACGGTGGCTTATAATTTCTTCAATGGGTTCAGTGAGGAGTGCTCGAGGCTTTTCATTGGGAATGTGGGTTTTGATTTCTCCGGTAATTGTATTCCTGGGAGGGACATGCAGAGACCTCAACCAGAATGTTCTGTCATCCCAGGTGGTAGCCTAAGTTGTCTCAGAATTCCCACTCCAAAGCCTCTCGTTTGTGCCTCCCTCGCTGAGCAGCCACACCATTTGGGGATGGTTCATATAAGGATCTTTATGTTTTATAACTCTCTTCCACCTATAAGCAAGGCATATGGCACCATATGCTTGGTGGCTACTGCGGCTTTTCAACTTGGACTATATAGTCCAGTACACATTGAATTACTATATGAAGAAGTGTTCTATCGCTTTCAGGTCTGGAGGCTGTTCACAAACTTCTTTTTCCTTGGGAAGTTCTCTATCAATTTTGGGATTCGTCTCTTAATGATAGCAAGGTATGGTGTACAACTTGAGAACGGACCGTTTGACAGGAGAACTGCAGACTTCTTGTGGATGATGATATTTGGAGCCTTTACTCTATTGGTTTTGTCTGCCATCCCCATTTTTTGGTCTCCTTTCTTGGGAGTATCACTTGTGTTTATGCTTCTTTACGTCTGGAGTAGAGAATATCCAAATGCCCAAATCAACATATATGGACTTGTTTCACTTAAGGCTTTCTATTTCCCATGGGCGATGCTTGCTTTGGATGTCATATTTGGTTCACCTCTAGTGCCAGATCTGCTAGGTATCATTGCAGGACATCTGTACTACTTCTTGACGGTATTGCATCCACTTGCAGGCGGGAAGAACATATTGAAGACTCCAATGTGGGTGTATCCTTACTGTTTTTGGTTCTTTAAAGCGTTCAGTAGGTGGAGAATAGGAGCCCGACCGGTGACCCGTGGCCAGCCAACTAATCCTGCTGAACCGGAGAGGAGTTCAGGCGTGGCTTTCAGGGGAAGATCTTACCGACTTAGTGGATAA 1926 0.432 MEKSKKILGFLILLLHLTPAKSAIGSIGGGTNSPEPSGSSMSKMETAYTSLQAWKSAITDDPLRILDSWVGSNVCSYKGVFCASSGSGGGVVVAGIDLNHANLQGSLVKELSLLTDMSLLHLNSNRFTGTVPDTFKDLLFLEELDLSNNLLSGDFPAVTLYMPTLIYLDLRFNSFSGSIPEELFYKNLDAIFLNDNQFEGEIPQSLGNSPASVINLANNKFSGSIPASMGFMGSKLREILFLNNQISGCIPEGVGLFTDIQVLDVSFNSLMGHLPDTLSCLQDIQVLNLGHNKLSGELPDVVCSLRSLMNLTVAYNFFNGFSEECSRLFIGNVGFDFSGNCIPGRDMQRPQPECSVIPGGSLSCLRIPTPKPLVCASLAEQPHHLGMVHIRIFMFYNSLPPISKAYGTICLVATAAFQLGLYSPVHIELLYEEVFYRFQVWRLFTNFFFLGKFSINFGIRLLMIARYGVQLENGPFDRRTADFLWMMIFGAFTLLVLSAIPIFWSPFLGVSLVFMLLYVWSREYPNAQINIYGLVSLKAFYFPWAMLALDVIFGSPLVPDLLGIIAGHLYYFLTVLHPLAGGKNILKTPMWVYPYCFWFFKAFSRWRIGARPVTRGQPTNPAEPERSSGVAFRGRSYRLSG 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g3180 641 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 39 379 - -
Sto10g3180 641 SUPERFAMILY Rhomboid-like 397 574 IPR035952 -
Sto10g3180 641 Gene3D Ribonuclease Inhibitor 212 355 IPR032675 -
Sto10g3180 641 SUPERFAMILY L domain-like 49 341 - -
Sto10g3180 641 PANTHER LRR/EXTENSIN 39 379 - -
Sto10g3180 641 Pfam Leucine rich repeat N-terminal domain 48 82 IPR013210 -
Sto10g3180 641 Pfam Leucine rich repeat 120 174 IPR001611 GO:0005515
Sto10g3180 641 Pfam Der1-like family 399 589 IPR007599 -
Sto10g3180 641 Gene3D Ribonuclease Inhibitor 45 210 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g3180 Sto-Chr10 41080408 41085740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g3180 43 366 Leucine-rich Repeat extension Gene Families AT3G24480 49.547 2.69e-104 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g3180 - - gmx:100790827 568.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g3180 10 41080408 41085740 Sto10g3180 10 41080408 41085740 ECH