Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g3179 ATGTCGTGGCAAACTTACGTTGACGATCACTTGATGTGTGACATCGACGGGCAAGGGCAGCATCTGGCGGCGGCGGCCATCCTGGGGCTGGATGGCTCTATCTGGGCTCAGAGCTCTTCCTTCCCTCAGTTTAAGGGGTCAGAGATCGGTGATATAATGAAAGATTTCGATGAACCCGGGCATCTTGCTCCTACAGGCTTGCACGTTGCAGGCACCAAGTACATGGTCATCCAGGGAGAGCCCGGAGCTGTCATCCGTGGCAAGAAGggatctGGAGGAATCACCATAAAGAAAACAGCACAAGCTCTAATTTGTGGCATCTATGAGGAACCAGTCACTCCTGGACAGTGCAACATGGTTGTGCACATCATGTCGTGGCAAACCTACGTCGATGATCACCTTATGTGCGAGATCGAAGGTAATCATCTCACTTCTGCCGCCATCCTTGGTCAAGACGGCAGCGTTTGGGCCCAGAGCTCCACTTTCCCTCAGATCAAGCCTGAGGAAGTAACTGCTATCATGAATGACTTTAACGAGCCTGGATCTCTTGCTCCAACTGGATTATATATTGGTGGCACAAAATATATGGTGATTCAAGGTGAATCAGGAGCAGTCATTCGAGGGAAGAAGGGTCCTGGTGGTGTTACTGTGAAGAAGACCAATATGGCCCTAATCATTGGGATTTATGATGAACCAATGACTCCGGGTCAGTGCAACATGATAGTGGAAAGGCTTGGTGACTACCTCATTGATcagagtttttaa 765 0.4863 MSWQTYVDDHLMCDIDGQGQHLAAAAILGLDGSIWAQSSSFPQFKGSEIGDIMKDFDEPGHLAPTGLHVAGTKYMVIQGEPGAVIRGKKGSGGITIKKTAQALICGIYEEPVTPGQCNMVVHIMSWQTYVDDHLMCEIEGNHLTSAAILGQDGSVWAQSSTFPQIKPEEVTAIMNDFNEPGSLAPTGLYIGGTKYMVIQGESGAVIRGKKGPGGVTVKKTNMALIIGIYDEPMTPGQCNMIVERLGDYLIDQSF 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g3179 254 PRINTS Profilin signature 126 135 IPR005455 GO:0003779
Sto10g3179 254 PRINTS Profilin signature 144 153 IPR005455 GO:0003779
Sto10g3179 254 PRINTS Profilin signature 163 183 IPR005455 GO:0003779
Sto10g3179 254 PRINTS Profilin signature 187 201 IPR005455 GO:0003779
Sto10g3179 254 PRINTS Profilin signature 223 236 IPR005455 GO:0003779
Sto10g3179 254 PRINTS Profilin signature 236 253 IPR005455 GO:0003779
Sto10g3179 254 PRINTS Plant profilin signature 124 137 IPR005455 GO:0003779
Sto10g3179 254 PRINTS Plant profilin signature 150 163 IPR005455 GO:0003779
Sto10g3179 254 PRINTS Plant profilin signature 175 189 IPR005455 GO:0003779
Sto10g3179 254 PRINTS Plant profilin signature 194 203 IPR005455 GO:0003779
Sto10g3179 254 PRINTS Plant profilin signature 207 222 IPR005455 GO:0003779
Sto10g3179 254 PRINTS Plant profilin signature 227 240 IPR005455 GO:0003779
Sto10g3179 254 PRINTS Plant profilin signature 240 253 IPR005455 GO:0003779
Sto10g3179 254 PANTHER PROFILIN 1 122 - -
Sto10g3179 254 PANTHER PROFILIN 124 253 - -
Sto10g3179 254 Gene3D Dynein light chain 2a, cytoplasmic 124 253 - -
Sto10g3179 254 Gene3D Dynein light chain 2a, cytoplasmic 1 123 - -
Sto10g3179 254 Pfam Profilin 124 253 IPR005455 GO:0003779
Sto10g3179 254 Pfam Profilin 1 122 IPR005455 GO:0003779
Sto10g3179 254 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779
Sto10g3179 254 CDD PROF 125 254 IPR005455 GO:0003779
Sto10g3179 254 SUPERFAMILY Profilin (actin-binding protein) 125 254 IPR036140 -
Sto10g3179 254 SUPERFAMILY Profilin (actin-binding protein) 2 122 IPR036140 -
Sto10g3179 254 PANTHER PROFILIN 124 253 IPR005455 GO:0003779
Sto10g3179 254 PANTHER PROFILIN 1 122 IPR005455 GO:0003779
Sto10g3179 254 SMART prof_2 1 121 IPR005455 GO:0003779
Sto10g3179 254 SMART prof_2 124 254 IPR005455 GO:0003779
Sto10g3179 254 CDD PROF 2 122 IPR005455 GO:0003779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g3179 Sto-Chr10 41075402 41079498 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g3179 124 254 Cytoskeleton Gene Families AT2G19760 76.336 1.67e-75 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g3179 K05759 - rcu:8265128 253.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g3179 10 41075402 41079498 Sto1g0313 1 2449099 2451153 ECH
Sto10g3179 10 41075402 41079498 Sto10g3179 10 41075402 41079498 ECH