Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g3152 ATGATCACGAATCAATTGGGTTTTCATCTTCTGATTCTCCATTTCATCTTCTTCAGATTTTCCTGCAAAGCACAGAGTTCAGCAAGTGCACCTTCACAAGATGCCATCTCCAGTTTCCAACCAAGTCTTGCTGTTGTCATAGGAATCCTCTGCTTCATGTTTTCTCTGACATGCATTCTTCTCATGTATGCCAAGTTCTGCAACACAAGAGCTTCTGTCCATTGGGATCCAGAAAGTCAACCTGGGATTCTCAGAACAAGGTCAAGATTCTCAGGAATCGACAAGACTGTCATAGAATCACTTCCCTTCTTCAGATTCTCTTCCCTCAGAGGATCAAAAGAAGGCCTTGAATGTTCAGTGTGTTTATCAAAGTTTGAAGACATTGAAATCCTCAGACTTCTTCCTAAGTGCAAACATGCTTTTCACATTAATTGCATCGATCATTGGCTTGAGAAACACTCAAGTTGTCCTCTTTGTAGGCACAAGGTCAATCCTGAAGACCAGACTATTTTCACATACTCGAACAGCATGAGGCTTCTTGTTAATGGTGGATCAGAATTGGGAGAAGAATCCAACATAGAGCTTTTTGttcagagagaggaagaagaagaagaagaacaaaatgGGTCATCAAGATTCAATATTGGAAGCAGCTTTAGGAGAATTTTAAAGGGTACTACTGCTAATActgtaaaagaagaagaattgccTATACAAAAAGAAGCTGATGATGGTGATTACAACAAGGTCTATCACAAGCACAAACACAAGATCACCATATCTGATTTTGTTCTTAGGAACAGGTGGAGCAACGTGAGCTCCTCAGACATCATGTTCTTGAACTCAGAGATGATTGGTTCAGTgtcaagtttaaggtttaacaaTTTGGAATCAAATGAGAATGTTATGATGAACATGAAGGAGGAGATTGAGAACAGAGTGTCCAATTCTGTGAATCCAGATTGTGCAGGAAATTCTAGTCATACATTGAAGATTGTGAATCCAGCTGAGAAAAGATCAATGTCGGATATCACTGCCGTGTCTAGATTTAGAGATTCAGGCATGAAAAATGAGACCTTTAAAGGCTCTTCTTTGCTTGATGATAATAACAATGTtagagaggaaagaaagaggcaGATTTGGCTTCCAATTGCTAGAAGAACAGTTCAATGGTTTGTGAACAGAGAAAACAGCCCTTGTTCGCGCCTCTCTTTGTCACCTCATGGAATCGCTGTTTCGCAGTCCCATACTTTTGACCTGAAAGCATCCAAGCCGTTAAGACTAGATGGTGATTCTGTGAGAGTAATGGCATCTGGGAATGTGTCACAAGCAAGCCCAGCTGCTACACCAGAAGATGTACTTGAGTGGGTCAAACAGGACAAACGAAGAATGCTTCATGTTGTATATCGCGTTGGGGACTTGGATAGGACCATCAAATTTTATACAGAGTGCCTAGGAATGAAGCTGCTGAGGAAACGTGACATACCAGAGGAGAGATACACCAATGCCTTTCTTGGATATGGACCTGAAGATGCACATTTTGTTGTTGAACTGACATATAATTATGGGGTTGATGAGTATGATATTGGAAAGGGATTTGGACATTTTGGTATTGCCGTTGATGATGTTGCAAAAACTGTGGAACTCATTAGAGCCAAGGGAGGCAAAATCACTAGAGAGCCTGGTCCTGTCAAGGGAGGCAACACAGTAATTGCATTCATTGAAGATCCTGATGGTTATAAATTTGAACTCTTGCAAAGAGGTCCCAGTCCTGAGCCTTTGTGCCAAGTAATGCTTCGAGTAGGTGATCTAGATCGATCCATACAATTTTATGAGAAGGCTTTTGGTATGGAGCTTCTTCGTACACGAGACAATCCAGAGTACAAGtaTACCATAGCAATGATGGGTTATGGTCCAGAAGATAAAAGTGCTGTTCTGGAGTTGACTTACAACTATGGAGTCACTGAATATGACAAAGGAAATGCTTATGCTCAGATTGCAATAGGTACAGATGATGTGTACAAAACAGCCGAAGCTATCAAACTTGCTGGTGGGAAGATTACTCGGGAACCTGGACCATTACCTGGCATCAACACAAAAATAACTGCATGCTTGGACCCTGATGGTTGGAAGGCGGTGAATTTCAGGGGCAATACAGAAGGGACAGATTTGATTTCCATTCATGGCTTTGCTTTTAACCATCTTTCTTGCACCatcttccttctttcttctcaATCTTCCTCACACCACAAAATGGATGCCACACACAAATCAAAGCTTCCCTTTGTTGAACAACATCAATATCGATATCAATACCAATACCAAtacccttccttctcccaaAACCAGCAAACCCATTTCAGTAATTTCCACCCTCTGTTCTCTACAATGGAGTTCAATGAGGTAAACCATGAAAGCACTGAAAAAGGCAGTTCCTTTACGCCATGTGAAGAAGCCCTTTTATCAGGGGATTCATATTCTTATAATTCTTATGATGTTGTTGGTGAAAGTTTCTGTGCAAAGTCAGATACAGACTCTTGCAGTGAGGTGGGTGAagaaggtgatgatgatgaagtgaGTTTGGATGAGTTATTGCTTCTGACTGATGCAAAAGCAAAGAAGAAAATTGAGGTTTTGGCTGAAATGGTTGGAGTTGAGAGTACAGAACCAGGGATAGTATTGGATGAAGTAGTGAGAGTTCTGAAGCACTTAAAGAGGATAAACAAGTTTTAA 2733 0.386 MITNQLGFHLLILHFIFFRFSCKAQSSASAPSQDAISSFQPSLAVVIGILCFMFSLTCILLMYAKFCNTRASVHWDPESQPGILRTRSRFSGIDKTVIESLPFFRFSSLRGSKEGLECSVCLSKFEDIEILRLLPKCKHAFHINCIDHWLEKHSSCPLCRHKVNPEDQTIFTYSNSMRLLVNGGSELGEESNIELFVQREEEEEEEQNGSSRFNIGSSFRRILKGTTANTVKEEELPIQKEADDGDYNKVYHKHKHKITISDFVLRNRWSNVSSSDIMFLNSEMIGSVSSLRFNNLESNENVMMNMKEEIENRVSNSVNPDCAGNSSHTLKIVNPAEKRSMSDITAVSRFRDSGMKNETFKGSSLLDDNNNVREERKRQIWLPIARRTVQWFVNRENSPCSRLSLSPHGIAVSQSHTFDLKASKPLRLDGDSVRVMASGNVSQASPAATPEDVLEWVKQDKRRMLHVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEERYTNAFLGYGPEDAHFVVELTYNYGVDEYDIGKGFGHFGIAVDDVAKTVELIRAKGGKITREPGPVKGGNTVIAFIEDPDGYKFELLQRGPSPEPLCQVMLRVGDLDRSIQFYEKAFGMELLRTRDNPEYKYTIAMMGYGPEDKSAVLELTYNYGVTEYDKGNAYAQIAIGTDDVYKTAEAIKLAGGKITREPGPLPGINTKITACLDPDGWKAVNFRGNTEGTDLISIHGFAFNHLSCTIFLLSSQSSSHHKMDATHKSKLPFVEQHQYRYQYQYQYPSFSQNQQTHFSNFHPLFSTMEFNEVNHESTEKGSSFTPCEEALLSGDSYSYNSYDVVGESFCAKSDTDSCSEVGEEGDDDEVSLDELLLLTDAKAKKKIEVLAEMVGVESTEPGIVLDEVVRVLKHLKRINKF 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g3152 910 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 169 IPR013083 -
Sto10g3152 910 Gene3D - 435 588 IPR029068 -
Sto10g3152 910 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 464 584 IPR004360 -
Sto10g3152 910 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 596 710 IPR004360 -
Sto10g3152 910 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Sto10g3152 910 ProSitePatterns Glyoxalase I signature 1. 596 617 IPR018146 GO:0004462|GO:0046872
Sto10g3152 910 CDD GlxI_Ni 594 711 - -
Sto10g3152 910 SUPERFAMILY RING/U-box 97 166 - -
Sto10g3152 910 TIGRFAM glyox_I: lactoylglutathione lyase 594 712 IPR004361 GO:0004462|GO:0046872
Sto10g3152 910 TIGRFAM glyox_I: lactoylglutathione lyase 452 596 IPR004361 GO:0004462|GO:0046872
Sto10g3152 910 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 462 592 IPR029068 -
Sto10g3152 910 CDD GlxI_Ni 464 585 - -
Sto10g3152 910 SMART ring_2 118 159 IPR001841 -
Sto10g3152 910 PANTHER LACTOYLGLUTATHIONE LYASE, CHLOROPLASTIC-RELATED 394 713 - -
Sto10g3152 910 Gene3D - 590 715 IPR029068 -
Sto10g3152 910 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 594 710 IPR029068 -
Sto10g3152 910 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 463 587 IPR037523 -
Sto10g3152 910 Pfam Ring finger domain 117 160 IPR001841 -
Sto10g3152 910 Coils Coil 293 313 - -
Sto10g3152 910 ProSitePatterns Glyoxalase I signature 2. 530 542 IPR018146 GO:0004462|GO:0046872
Sto10g3152 910 ProSitePatterns Glyoxalase I signature 1. 466 487 IPR018146 GO:0004462|GO:0046872
Sto10g3152 910 PANTHER LACTOYLGLUTATHIONE LYASE 394 713 - -
Sto10g3152 910 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 593 717 IPR037523 -
Sto10g3152 910 CDD RING-H2_PA-TM-RING 117 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g3152 Sto-Chr10 40881884 40893976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g3152 15 396 C3H Transcription Factor Family AT4G28890 46.313 1.07e-99 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g3152 K01759 - gmx:100780463 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g3152 10 40881884 40893976 Sto10g3152 10 40881884 40893976 ECH