Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sto10g3144 | ATGGAGAAAAGCTCCGATAAGTTTTCTGAGGGCTTGAATTTCAAGGCTACTGAGCTACGGCTCGGGTTACCCGGGTCGGAGTCACCTGAGAGGGAAACGGGTTTGGAAGACCAAAATGGGTACCCATTAGGCATACTGAAAAGTCTGGTGTCTGGAGCCAAGAGGGGTTTCTCAGACGCCATTGACGCTGGTTCTGGCAAGTGGGTTCTATCTGGGAAAGCTGGATCTGACATAGCCAAGAATCTCGTCGGGTCGGATTCTGATACGGGTTTGGGTCACTCTGTTGTGAAAGATAGTATTCCACAGTCACCAAAACCTTTGCATGACAAGAAGCCACAGCTTACTGCTCCTCtggaaaaGGCACAGGTTGTAGGATGGCCTCCAATTCGATCCTTCAGGAAGAACTCGATGGCTACGCCGTCTCAAAAGAACAGCAATGATGCAGAATCAGCCAAGAGTGGATGTCTTTATGTAAAAGTGAGCATGGATGGTGCCCCATACTTGAGGAAAGTGGATCTCAAAAACTTTGGTTCATACATGCAACTTTCTTCAGCACTGGAAAAGATGTTCAGTGGTTTTACAATCAGTCAATGCGGGTCTCATGGAGTTTCTGGTCGAGATAATATGAGTGAAAGTAGATTGATGGATCTCCTTCATGGTTCTGAATATGTGCTCACCTATGAAGATAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCATGGGAGATGTTCACTGATTCTTGCAAGAGGTTGAGGATAATGAAGAGTTCTGAAGCAATTGGACTAGCACCAAGAGCCATGGAAAAGTGCAAAAGTCGTAATTAA | 828 | 0.4553 | MEKSSDKFSEGLNFKATELRLGLPGSESPERETGLEDQNGYPLGILKSLVSGAKRGFSDAIDAGSGKWVLSGKAGSDIAKNLVGSDSDTGLGHSVVKDSIPQSPKPLHDKKPQLTAPLEKAQVVGWPPIRSFRKNSMATPSQKNSNDAESAKSGCLYVKVSMDGAPYLRKVDLKNFGSYMQLSSALEKMFSGFTISQCGSHGVSGRDNMSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIMKSSEAIGLAPRAMEKCKSRN | 275 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sto10g3144 | 275 | ProSiteProfiles | PB1 domain profile. | 155 | 257 | IPR000270 | GO:0005515 | |
Sto10g3144 | 275 | MobiDBLite | consensus disorder prediction | 93 | 116 | - | - | |
Sto10g3144 | 275 | PANTHER | AUXIN-RESPONSIVE PROTEIN IAA27 | 5 | 268 | - | - | |
Sto10g3144 | 275 | MobiDBLite | consensus disorder prediction | 19 | 39 | - | - | |
Sto10g3144 | 275 | Gene3D | - | 149 | 269 | - | - | |
Sto10g3144 | 275 | SUPERFAMILY | CAD & PB1 domains | 149 | 256 | - | - | |
Sto10g3144 | 275 | PANTHER | AUXIN-RESPONSIVE PROTEIN IAA17 | 5 | 268 | IPR003311 | GO:0005634|GO:0006355 | |
Sto10g3144 | 275 | Pfam | AUX/IAA family | 17 | 266 | IPR033389 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Sto10g3144 | Sto-Chr10 | 40828624 | 40831199 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Sto10g3144 | 139 | 265 | B3 DNA Binding Superfamily | AT4G23980 | 28.346 | 3.88e-08 | 52.4 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | AUX or IAA | Sto10g3144 | AUX_IAA | 6.4e-88 | CL0072 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sto10g3144 | K14484 | - | gmx:100803754 | 424.861 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Sto10g3144 | 10 | 40828624 | 40831199 | Sto10g3144 | 10 | 40828624 | 40831199 | ECH |