Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g3144 ATGGAGAAAAGCTCCGATAAGTTTTCTGAGGGCTTGAATTTCAAGGCTACTGAGCTACGGCTCGGGTTACCCGGGTCGGAGTCACCTGAGAGGGAAACGGGTTTGGAAGACCAAAATGGGTACCCATTAGGCATACTGAAAAGTCTGGTGTCTGGAGCCAAGAGGGGTTTCTCAGACGCCATTGACGCTGGTTCTGGCAAGTGGGTTCTATCTGGGAAAGCTGGATCTGACATAGCCAAGAATCTCGTCGGGTCGGATTCTGATACGGGTTTGGGTCACTCTGTTGTGAAAGATAGTATTCCACAGTCACCAAAACCTTTGCATGACAAGAAGCCACAGCTTACTGCTCCTCtggaaaaGGCACAGGTTGTAGGATGGCCTCCAATTCGATCCTTCAGGAAGAACTCGATGGCTACGCCGTCTCAAAAGAACAGCAATGATGCAGAATCAGCCAAGAGTGGATGTCTTTATGTAAAAGTGAGCATGGATGGTGCCCCATACTTGAGGAAAGTGGATCTCAAAAACTTTGGTTCATACATGCAACTTTCTTCAGCACTGGAAAAGATGTTCAGTGGTTTTACAATCAGTCAATGCGGGTCTCATGGAGTTTCTGGTCGAGATAATATGAGTGAAAGTAGATTGATGGATCTCCTTCATGGTTCTGAATATGTGCTCACCTATGAAGATAAGGATGGTGATTGGATGCTAGTTGGTGATGTTCCATGGGAGATGTTCACTGATTCTTGCAAGAGGTTGAGGATAATGAAGAGTTCTGAAGCAATTGGACTAGCACCAAGAGCCATGGAAAAGTGCAAAAGTCGTAATTAA 828 0.4553 MEKSSDKFSEGLNFKATELRLGLPGSESPERETGLEDQNGYPLGILKSLVSGAKRGFSDAIDAGSGKWVLSGKAGSDIAKNLVGSDSDTGLGHSVVKDSIPQSPKPLHDKKPQLTAPLEKAQVVGWPPIRSFRKNSMATPSQKNSNDAESAKSGCLYVKVSMDGAPYLRKVDLKNFGSYMQLSSALEKMFSGFTISQCGSHGVSGRDNMSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIMKSSEAIGLAPRAMEKCKSRN 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g3144 275 ProSiteProfiles PB1 domain profile. 155 257 IPR000270 GO:0005515
Sto10g3144 275 MobiDBLite consensus disorder prediction 93 116 - -
Sto10g3144 275 PANTHER AUXIN-RESPONSIVE PROTEIN IAA27 5 268 - -
Sto10g3144 275 MobiDBLite consensus disorder prediction 19 39 - -
Sto10g3144 275 Gene3D - 149 269 - -
Sto10g3144 275 SUPERFAMILY CAD & PB1 domains 149 256 - -
Sto10g3144 275 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 5 268 IPR003311 GO:0005634|GO:0006355
Sto10g3144 275 Pfam AUX/IAA family 17 266 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g3144 Sto-Chr10 40828624 40831199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g3144 139 265 B3 DNA Binding Superfamily AT4G23980 28.346 3.88e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Sto10g3144 AUX_IAA 6.4e-88 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g3144 K14484 - gmx:100803754 424.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g3144 10 40828624 40831199 Sto10g3144 10 40828624 40831199 ECH