Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g3138 ATGGGGGAAGGTCAGGAGGCTGATTGCCCTCCGAAGAATGTGTCGTCGGATGCTACTGCAGCTGCGTTGCCGTCGGATGTTCCCGCGAAGAAGCTGGCGAGGCAGCTCGATTTCACGGGTTTTGGTGGTGTGACGGAAAGTGTGGCAGTACCTGAACATCCGCAATCGCCGCTACAGCCTCAGTCGCAGGCGGTGGCACAGAGTCAGCCGCAGCCACGCCCACTTACACAGCAATCGGTTGCTGTCATGCCCGCGGCACCACAGACTCCTCTTTCTTCCGCGAGGGTTGGGAAGCCAGAATctccaaaatcaaaatcaagacCGAACTTTGATATGAAAGAAATTACTCCAAAGAAGCAAAAACAGTGCAATTGTAAACACTCAAAATGCTTAAAGCTATATTGTGAATGTTTTGCATCGGGAATATATTGTGATGGGTGCAATTGTGTAAATTGCTATAACAATGTTGAAAATGAGGCTGCTAGACGAGAGGCTGTTGAAGCTACTTTAGAGCGCAATCCAAATGCATTTAGGCCAAAAATTGCTAGTAGCCCTCATGCAACACGGGATAGCAGGGAGGAGGCTGGCGAAGTTTTACTATTAGGAAAGCATAACAAGGGTTGCCATTGCAAAAAATCAGGGTGCCTCAAGAAGTACTGTGAGTGCTTTCAAGCCAACATTCTTTGCTCTGAAAATTGTAAATGCATGGACTGCAAAAATTTTGAGGGAAGTGAAGAGAGACAAGCCTTGTTCCATGGAGATCAAAATAATAACATTGCATTTATTCAGCAGGCAGCAAATGCTGCCATAACTGGAGCAATTGGATCCTCTGGTTATTCATCCCCACCAGTGtccaagaaaagaaaaggtcAGGAGCTTTTCTTTGGGCCAACAGCCAAGGATCCGTCTGTGGGCAGGATTGGGCAATTTCAACAGGTAAACCATATCAGAAGTCCTGCACCGTCCTCGTCCTTGCCTCCTATCCCCAGTGCTCGAGTTGGAAGTGCATCATTAGGCCCTTCAAAATTTACTTACAGGTCTCTTTTAGCAGACATCATACAACCACAGCACTTGAAGGAGCTTTGCTCAGTTCTGGTGCTATATTCAGGGCAAGCTGCAAAGACACTTACAGACCAGAAAATTTTGATGGAGAAGAATGCCGAAGATCAGGTGGAAACTTCTGTGGCTTCTTCAACTCAAGAGCAATTGCCAAATCAAAAGGAAGCTGAAGTTGAGAAAGCCATGGCTGATGATTGTTCAAGTGCAAACCAGACTGATAAAATCAGCCCGGATAATTCAAGTTCAGATGGCGCTGATGTTCCGAAAGGGAGACCAATGTCCCCTGGAACTTTAGCCTTGATGTGTGATGAGCAAGATACAATGTTTATGACGGCTGCCTCCCCTAACGGATCAATGGCCCATGCCTGCAACACATCTTCACAGTCTCCTTATGGACAAGGCATGACGGAGGTTTATGCAGAGCAAGAAAGGATAGTATTGACCAAGTTTAGAGATTTTCTTAATCGGACCGTCAACTTTTACTTTCTGCAATTTCCTTACCTCAACTTTGAGACAAAGTGTTCTTCATTAGCCAGAAGTGAATTAGAGAGTCAGAAGGACCCAGTCAACAATGGCACTGGAATTGCCAGTACTGAAACAGTGCATCAGCAGGGAGCCACTGGTAATGGTGTTGTGCCGcccgtggccactagtatgaacGTAATAGCTTCAGAGGTTCCTACTAACATTGCCCCTGAAAATGGGGAAAGTAAGCCTAAGATTGAAAAGGAGATATGA 1797 0.4463 MGEGQEADCPPKNVSSDATAAALPSDVPAKKLARQLDFTGFGGVTESVAVPEHPQSPLQPQSQAVAQSQPQPRPLTQQSVAVMPAAPQTPLSSARVGKPESPKSKSRPNFDMKEITPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCYNNVENEAARREAVEATLERNPNAFRPKIASSPHATRDSREEAGEVLLLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNNIAFIQQAANAAITGAIGSSGYSSPPVSKKRKGQELFFGPTAKDPSVGRIGQFQQVNHIRSPAPSSSLPPIPSARVGSASLGPSKFTYRSLLADIIQPQHLKELCSVLVLYSGQAAKTLTDQKILMEKNAEDQVETSVASSTQEQLPNQKEAEVEKAMADDCSSANQTDKISPDNSSSDGADVPKGRPMSPGTLALMCDEQDTMFMTAASPNGSMAHACNTSSQSPYGQGMTEVYAEQERIVLTKFRDFLNRTVNFYFLQFPYLNFETKCSSLARSELESQKDPVNNGTGIASTETVHQQGATGNGVVPPVATSMNVIASEVPTNIAPENGESKPKIEKEI 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g3138 598 SMART CXC_2 118 158 IPR033467 -
Sto10g3138 598 SMART CXC_2 203 244 IPR033467 -
Sto10g3138 598 MobiDBLite consensus disorder prediction 45 113 - -
Sto10g3138 598 MobiDBLite consensus disorder prediction 392 451 - -
Sto10g3138 598 MobiDBLite consensus disorder prediction 1 26 - -
Sto10g3138 598 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 120 155 IPR005172 -
Sto10g3138 598 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 206 240 IPR005172 -
Sto10g3138 598 ProSiteProfiles CRC domain profile. 119 243 IPR005172 -
Sto10g3138 598 PANTHER TESMIN/TSO1-RELATED 24 90 IPR028307 -
Sto10g3138 598 PANTHER TESMIN/TSO1-RELATED 53 570 IPR028307 -
Sto10g3138 598 MobiDBLite consensus disorder prediction 418 436 - -
Sto10g3138 598 MobiDBLite consensus disorder prediction 52 86 - -
Sto10g3138 598 Coils Coil 153 173 - -
Sto10g3138 598 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 53 570 - -
Sto10g3138 598 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 24 90 - -
Sto10g3138 598 MobiDBLite consensus disorder prediction 579 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g3138 Sto-Chr10 40750112 40757455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g3138 1 536 CPP Transcription Factor Family AT4G29000 55.556 0.0 562
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Sto10g3138 TCR 3.2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g3138 - - gmx:100777698 827.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g3138 10 40750112 40757455 Sto10g3138 10 40750112 40757455 ECH