Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g3127 atgtCCTCCCTCAGTATTCTTCCTCCATTACCATCGATTCAAAACCCTAGCTTGGACCATACCCACTTCTTCAAACCCATTAAACTCGTCAACCTTCACCCAAATTGCGCGACTTCTCTATCGCTTGAATTTCACCGCCGCTTCTTCGTCTTAAGCAAGACCACTAACAGCTTTTGCTTTGGAATCCAAAACCGTGGAATCCACTACCGGAGGGTCAATTGCGATGCTATTAAGGATTCCGGCGAAGAGACGAAGGTGGTGTTAGACTCCGGCGGCGGTGACGATGGGGGAGGAGGTGGCGGCGACGGTGGTGGGGATAGGCAGGTGGAGAAGAAAGATGGGTCTTCGGGGCCTTTGCCTGATTGGTTGAACTTTACCTCTGATGACGCAAAGACGGTCTTTGCGGCACTGGCAATCTCGCTTGCGTTTCGGTCCTTTGTGGCCGAACCTAGGTACATTCCTTCGTTGTCAATGTATCCTACATTTGATGTTGGAGATCGAATTGTTGCAGAAAAGGTTTCATACTATTTTAGAAAACCATGTGCAAATGACATAGTGATTTTTAAAAGCCCACCAGTCCTTCAAGAAGTTGGATATACAGATGATGATGTTTTCATAAAACGAGTGGTTGCAAAGGGAGGTGATATAGTGGAGGTTCGAAAGGGGAGGCTTATAGTTAATGGGGTTGAAATGAGTGAGAAATTCATCCTTGAACCACCTTCTTATGACATGACTCCTATACGTGTACCAGAGAACTATGTTTTTGTGATGGGAGACAACCGTAATAACAGCTATGATTCACATGTGTGGGGGCCTTTGCCAGCCAAGAACATCATAGGAAGATCAGTATTACGCTATTGGCCACCAAATAGAATTGGCAGCACTGTTTCTGAGGGGGGTTGTCCTGTTGAAAAAGAAGAGGGGAGTACTACTAGTATAGCTTCTCAATGA 951 0.4585 MSSLSILPPLPSIQNPSLDHTHFFKPIKLVNLHPNCATSLSLEFHRRFFVLSKTTNSFCFGIQNRGIHYRRVNCDAIKDSGEETKVVLDSGGGDDGGGGGGDGGGDRQVEKKDGSSGPLPDWLNFTSDDAKTVFAALAISLAFRSFVAEPRYIPSLSMYPTFDVGDRIVAEKVSYYFRKPCANDIVIFKSPPVLQEVGYTDDDVFIKRVVAKGGDIVEVRKGRLIVNGVEMSEKFILEPPSYDMTPIRVPENYVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVLRYWPPNRIGSTVSEGGCPVEKEEGSTTSIASQ 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g3127 316 Pfam Signal peptidase, peptidase S26 130 287 IPR019533 GO:0004252|GO:0006465
Sto10g3127 316 MobiDBLite consensus disorder prediction 296 316 - -
Sto10g3127 316 ProSitePatterns Signal peptidases I serine active site. 155 162 IPR019756 GO:0004252|GO:0016021
Sto10g3127 316 ProSitePatterns Signal peptidases I signature 3. 254 267 IPR019758 GO:0004252|GO:0016021
Sto10g3127 316 MobiDBLite consensus disorder prediction 87 120 - -
Sto10g3127 316 Gene3D Umud Fragment, subunit A 143 298 - -
Sto10g3127 316 PANTHER SIGNAL PEPTIDASE I 115 298 IPR000223 GO:0006508|GO:0008236|GO:0016020
Sto10g3127 316 PANTHER THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED 115 298 - -
Sto10g3127 316 PRINTS Bacterial leader peptidase 1 (S26A) family signature 146 162 IPR000223 GO:0006508|GO:0008236|GO:0016020
Sto10g3127 316 PRINTS Bacterial leader peptidase 1 (S26A) family signature 205 217 IPR000223 GO:0006508|GO:0008236|GO:0016020
Sto10g3127 316 PRINTS Bacterial leader peptidase 1 (S26A) family signature 249 268 IPR000223 GO:0006508|GO:0008236|GO:0016020
Sto10g3127 316 TIGRFAM sigpep_I_bact: signal peptidase I 131 289 IPR000223 GO:0006508|GO:0008236|GO:0016020
Sto10g3127 316 ProSitePatterns Signal peptidases I lysine active site. 207 219 IPR019757 GO:0008236|GO:0016021
Sto10g3127 316 CDD S26_SPase_I 149 281 IPR019533 GO:0004252|GO:0006465
Sto10g3127 316 SUPERFAMILY LexA/Signal peptidase 144 295 IPR036286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g3127 Sto-Chr10 40698321 40700920 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g3127 158 288 MADS-box Gene Family AT1G29960 31.579 1.85e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g3127 K03100 - jre:108980416 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g3127 10 40698321 40700920 Sto10g3127 10 40698321 40700920 ECH