Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g3125 ATGTCAACGGCACCGTCTCCCGGAGCTTCTCCGGCACCCACGTCGCCGCCGGCGACCAACTCCACTTCTCCTCCGCCGACGACGCCGCCGGCAACTCCCTCCGCACCACCACCGGCAACTCCTTCAGCTCCTCCGCCGGCCACTCCTTCCCCTCCAGCCCCAGCTACGCCTACTCCCAGCCCACCTTCCTCCTCAACGCCGGCGTCTTCTCCGCCGCAGGAATCTCCGGCGTCGCCTTCTCCACCGTCTAGTACCAACACTCCGCCGAGTCCGGCGTCTCAGAGCTCGCCGCCTCCTCCCTCGAGCTCAGGTTCGCCTTCTACTCCGAATCGAAGCCCGTCGACGCCTTCGTCAAAATCGCCGCCGCCTCCGCCGCCGTCGTCTTCGTCCTCGTCGAGTATATCAACTGGGGTTGTTGTTGGAATCGCAGTTGGGGCTGTTGCGATTCTTCTAGTGTTGAGTCTTCTCTGCATTTGCtgtagaaagaagaagagaagacgtGATGAGGAATACTATGTGCCACCACCGCCTCAGGGACCCAAAAATGATCCATATGGTGGCCCACCACGTTATTGGCAACACAACGCTCCCCCACCTTCAGATCATGTGGTTTCAATGATGCCAAAGCCATCACCACCACAGCCGCCGCCACCGCCTCCTTTCATAAGCAGCAGTATTGGCTCTGGCTCCAACTATTCAGGTGGTGAAacccctcttcctcctccttctccagGCTTTGCATTGGGCTTCTCAAAAAGCACATTCACATATGAGGAGTTGGCAAGGGCAACAGATGGATTCTCTGATGCCAACCTTCTTGGACAAGGTGGATTTGGGTATGTGCACAGAGGAATTCTTCCCAATGGGAAGGAGGTGGCTGTGAAGCAGCTAAAGGCAGGAAGTGGACAAGGGGAGCGTGAGTTTCAAGCTGAAGTTGAGATCATTAGCCGAGTTCATCATAAACATCTTGTTTCGTTGGTTGGATATTGCATCAGAGGGACACAAAGGTTGCTTGTTTATGAATTTGTTCCCAACAATACATTGGAGTTCCACTTACATGGAAAAGGGAGACCTACCATGGATTGGCCTACAAGACTGAAAATTGCTTTAGGATCAGCGAAAGGATTGGCGTATCTTCACGAGGATTGTCATCCTAAGATCATTCATCGTGATATCAAAGCTGCTAACATACTTCTTGATTTCAAGTTTGAAGCAAAGGTTGCAGATTTTGGACTTGCAAAGTTTTCTTCTGATGTCAACACTCATGTTTCCACTCGAGTTATGGGGACTTTTGGTTATCTTGCTCCTGAATATGCTTCTAGTGGGAAACTCACTGAAAAATCAGATGTTTTCTCCTTTGGAGTCATGCTTCTGGAATTAATTACTGGACGCCGACCCGTTGATTCAAATCATACATTCGTGGAGGATAGTTTGGTAGACTGGGCAAGGCCTGTGCTCACACGTGCTTTGGAAGATCAAAGTTTTGATTCTCTCGTTGATCCAAGACTTCAACACGAATTTGACCCTAATGAGATGGGTCGCATGGTGGCGTGTGCTGCAGCTTGTATACGACACTCGGCGCGACGCAGACCAAGGATGAGCCAGGTTGTTCGTGCTTTGGAAGGAGATGTGTCTCTATCAGATCTTAATGAGGGAATTAGACCTGGACATAGCACTATGTACAGTTCTCATGGAAGCTCAGATTATGACACAGCTCAATACAAGGAGGACATGAAAAAGTTCAGAAAAATGGCATTAGGAAGTGGAACACAGGAGTATGGAGCCAGCAGTGAATACAGTGGACCACCGACAAGCGAGTACGGGTTATACCCTTCCGGCTCAAGCAGCGAAGGACCAAGCCGCCAGACCACCCgggaaatggaaatgagaaGGATGAAAAACAGCCAAGGTTACAGTGGAAGTTCTTAA 1929 0.4909 MSTAPSPGASPAPTSPPATNSTSPPPTTPPATPSAPPPATPSAPPPATPSPPAPATPTPSPPSSSTPASSPPQESPASPSPPSSTNTPPSPASQSSPPPPSSSGSPSTPNRSPSTPSSKSPPPPPPSSSSSSSISTGVVVGIAVGAVAILLVLSLLCICCRKKKRRRDEEYYVPPPPQGPKNDPYGGPPRYWQHNAPPPSDHVVSMMPKPSPPQPPPPPPFISSSIGSGSNYSGGETPLPPPSPGFALGFSKSTFTYEELARATDGFSDANLLGQGGFGYVHRGILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCIRGTQRLLVYEFVPNNTLEFHLHGKGRPTMDWPTRLKIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKFSSDVNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDSNHTFVEDSLVDWARPVLTRALEDQSFDSLVDPRLQHEFDPNEMGRMVACAAACIRHSARRRPRMSQVVRALEGDVSLSDLNEGIRPGHSTMYSSHGSSDYDTAQYKEDMKKFRKMALGSGTQEYGASSEYSGPPTSEYGLYPSGSSSEGPSRQTTREMEMRRMKNSQGYSGSS 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g3125 642 PRINTS Proline rich extensin signature 2 14 - -
Sto10g3125 642 PRINTS Proline rich extensin signature 17 38 - -
Sto10g3125 642 PRINTS Proline rich extensin signature 38 54 - -
Sto10g3125 642 PRINTS Proline rich extensin signature 59 76 - -
Sto10g3125 642 SMART serkin_6 267 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto10g3125 642 Pfam Protein tyrosine and serine/threonine kinase 272 540 IPR001245 GO:0004672|GO:0006468
Sto10g3125 642 MobiDBLite consensus disorder prediction 591 642 - -
Sto10g3125 642 SUPERFAMILY Protein kinase-like (PK-like) 243 540 IPR011009 -
Sto10g3125 642 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 35 626 - -
Sto10g3125 642 ProSitePatterns Protein kinases ATP-binding region signature. 273 295 IPR017441 GO:0005524
Sto10g3125 642 Gene3D Phosphorylase Kinase; domain 1 249 342 - -
Sto10g3125 642 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 35 626 - -
Sto10g3125 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 387 399 IPR008271 GO:0004672|GO:0006468
Sto10g3125 642 MobiDBLite consensus disorder prediction 167 245 - -
Sto10g3125 642 MobiDBLite consensus disorder prediction 591 622 - -
Sto10g3125 642 Gene3D Transferase(Phosphotransferase) domain 1 343 550 - -
Sto10g3125 642 ProSiteProfiles Protein kinase domain profile. 267 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto10g3125 642 MobiDBLite consensus disorder prediction 1 134 - -
Sto10g3125 642 MobiDBLite consensus disorder prediction 115 129 - -
Sto10g3125 642 MobiDBLite consensus disorder prediction 9 106 - -
Sto10g3125 642 MobiDBLite consensus disorder prediction 203 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g3125 Sto-Chr10 40693272 40696537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g3125 32 625 Trihelix Transcription Factor Family AT1G70460 47.650 1.34e-166 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Sto10g3125 PK_Tyr_Ser-Thr 4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g3125 - - gmx:100781944 819.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g3125 10 40693272 40696537 Sto10g3125 10 40693272 40696537 ECH