Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g3116 ATGGAGGTGGAGCAGAATGACGTGATCGCACCGTTCGTTATAAAGACTTTTCAGATGGTCAACGATCCCTCCACTGACTCTCTCATCACTTGGGGCCGAGGCAATAATAGCTTCATCGTCACTGACCCTTTGGATTTCTCTCAGAGGATCTTACCTGCCTATTTCAAGCATAACAACTTCTCAAGCTTCGTTCGTCAGCTCAATACCTATggATTCAGAAAGGTGGATCCAGATCGATGGGAGTTTGCGAACGAGTGGTTCCTTAGGGGGCAGAAGCACTTGTTGAAGAATATTGTGAGGAGGAAGCAGAGCCGTCGGATTAATTCATCCTTGTTTCCCTATGAGGATCAGTTGGAGGACGAGGCGTTAGCGATGGAGATTACGAGGTTAAAGGCGGAGCAGAAATCATTGGAGGAGGAGCTTCAGGAGATGAATCGGAGATTGGAGGCTACGGAGAAACGTCCTCAGCAAATGATGGCGACAGAGTTTGAGGAAGAGGAAGCAACTGTGGGAGCTATAATGTCGTCTTCCTCGCCGGAGATAGATCGTTTGTGTCAGGCGTCGCCGACGGACGATACGACGTCGGCTTGGTGGAGCCAAAGGAATAGTATGAGTAATGGTACAATGGGATTGGGGAGGCCTGGGATTAATACTCAAGAGGCTTATCATTGCAACGCTGTTTCAAGTCCGTTGACGGCGGCGGCGAGAATGGATAACAACGCGGCGATGTCGGCGCGTGGGAGAGGGACCACCTACTCCGGTTGTGATTGCGAAGACGAAGATAGTAAACAGAAAATAAGGTTTCTTACTGCAGAAATGGCGGCGGAAAGTAGTCCAGGGCCGCCTTATCCATTCTCGCTGTTGGAAGGTGGTTTCTAG 879 0.4972 MEVEQNDVIAPFVIKTFQMVNDPSTDSLITWGRGNNSFIVTDPLDFSQRILPAYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKHLLKNIVRRKQSRRINSSLFPYEDQLEDEALAMEITRLKAEQKSLEEELQEMNRRLEATEKRPQQMMATEFEEEEATVGAIMSSSSPEIDRLCQASPTDDTTSAWWSQRNSMSNGTMGLGRPGINTQEAYHCNAVSSPLTAAARMDNNAAMSARGRGTTYSGCDCEDEDSKQKIRFLTAEMAAESSPGPPYPFSLLEGGF 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g3116 292 SUPERFAMILY "Winged helix" DNA-binding domain 9 101 IPR036390 -
Sto10g3116 292 Pfam HSF-type DNA-binding 12 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto10g3116 292 Gene3D - 4 102 IPR036388 -
Sto10g3116 292 PRINTS Heat shock factor (HSF) domain signature 12 35 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto10g3116 292 PRINTS Heat shock factor (HSF) domain signature 50 62 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto10g3116 292 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto10g3116 292 Coils Coil 115 154 - -
Sto10g3116 292 SMART hsfneu3 8 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto10g3116 292 ProSitePatterns HSF-type DNA-binding domain signature. 51 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto10g3116 292 PANTHER HEAT STRESS TRANSCRIPTION FACTOR C-1 10 221 - -
Sto10g3116 292 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 221 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g3116 Sto-Chr10 40634975 40636142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g3116 8 160 HSF AT3G24520 75.163 1.74e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Sto10g3116 HSF_DNA-bind 1.1e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g3116 K09419 - jre:108979361 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g3116 10 40634975 40636142 Sto10g3116 10 40634975 40636142 ECH