Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g3105 ATGCCGACCCGATCAACAGGAGCCATAGCCCAAGACTGGGAGCCGGTGGTCCTCTACAAGTCCAAACCCAAGGCCCAGGACCTGCGCAACCCGAAGGCCGTGAACCAGGCACTCCGGTCCGGAGCGGAGGTGCAGACGATCAAGAAGTTCGACGCCGGTTCGAACAAGAAAACCGCTCCGGTGAAGAACGCTCGGAAACTGGAGGAAGAAACTGAACCGGCGGCTCTGGAGAAAGTAGCGACGGAGGTGAGGCATGCGATACAGAAGGCTAGATTGGAGAAGAAGATGAGCCAAGCGGAGGTGGCGAAGCAGATCAACGAGCGGCCACAGGTGGTGCAGGAGTACGAGAACGGGAAGGCGGTGCCGAATCAGGCAGTGCTGGCCAAGATGGAAAGAGTGTTAGGCGTGAAACTCAGGGGAAAGAGAACCAGCAAGTGA 438 0.5822 MPTRSTGAIAQDWEPVVLYKSKPKAQDLRNPKAVNQALRSGAEVQTIKKFDAGSNKKTAPVKNARKLEEETEPAALEKVATEVRHAIQKARLEKKMSQAEVAKQINERPQVVQEYENGKAVPNQAVLAKMERVLGVKLRGKRTSK 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g3105 145 ProSiteProfiles Cro/C1-type HTH domain profile. 87 141 IPR001387 -
Sto10g3105 145 SUPERFAMILY lambda repressor-like DNA-binding domains 82 138 IPR010982 GO:0003677
Sto10g3105 145 Coils Coil 87 107 - -
Sto10g3105 145 PANTHER MULTIPROTEIN-BRIDGING FACTOR 1C 1 142 - -
Sto10g3105 145 SMART mbf_short4 86 141 IPR001387 -
Sto10g3105 145 MobiDBLite consensus disorder prediction 51 70 - -
Sto10g3105 145 CDD HTH_XRE 86 138 IPR001387 -
Sto10g3105 145 Pfam Helix-turn-helix 87 138 IPR001387 -
Sto10g3105 145 Gene3D - 71 145 IPR010982 GO:0003677
Sto10g3105 145 Pfam Multiprotein bridging factor 1 11 79 IPR013729 -
Sto10g3105 145 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 1 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g3105 Sto-Chr10 40582721 40583158 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Sto10g3105 MBF1 7.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g3105 K03627 - twl:119996545 238.424
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g3105 10 40582721 40583158 Sto10g3105 10 40582721 40583158 ECH