Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g3057 ATGGGGATTTCTGGGAGTAGCAGAAGAAGAGACCCTCCCTATTTTCATAACCCACCTCAACTTCCATCGCCTTACTATTACCCTGCAGAATCTCCGCCTCCGCCTCCGCCGGCGCCGCAAGGCTACTATTACACCTCAACCTCACCTTACACAATGCACAACAATAGCTATGTGTCTTACCCTCCTCTGTCTCCACCTCCTCAGACCGAGTTCTTCAGTTACTCAAATGTGTATAGCAGTTGCTCCAATTATTCCAATTCTATGTTGGATAGCGTCCATTACAACCCTTATTATGAAAATCATGCTATTGGGTGGCCTGCAATTGATGCTGTGGTTGGTACGGTCGTTTCGACACCACCCTATGTTGATCATCGAACCGCGAAGAGGATCAGGAACGATGTCAACGTGCATAGAGATACGTTGCAGCTGGAGGTAGATGAGCAAAACCCCGATCAGCACTTGGTTTCATTCATTTTCGATGCATTTTATGATGGGAGACCTAGTGTGTTCTCGATGCAGAAATGCATTACAATACTCTACTTTGCGAAGGAAGAGGAAAACTGTAGGTTAGTACCACTGTTTCCTGACGTATTTGTGCCAATCAGAGTCTCCTTTCAGAAAGGAGTTGGCCAGAAATTTTGTCAGCCGTCAGGAACAGGCATTAACTTAGGGTTCTTTGAGTTGGATGGTCTCTCAAAACCCTCACTTGGAGAAGACGCCTTCCCCCTTGTAATATGTGCTGAAACATGTTTGACAACTTCTTCAGCAGTAGATAACCTTGGTGATCCCATGCTAGATGTATTTCCTCACATGCAGATTACTGAAGCCATTGTAGAAAAAGGCAATATTGGTAGTCCTTTCCAGGTTAAAGTAGACCGCCAGATTCTGTGGACTGATGGTCTTCGTTATGAGTTAAAAGAGTTATATGGAATAGGAGGCTCTGCAGCAGCAGGTTTTGATGACAATGATACTGGGAAGGAGTGTGTAATATGCATGACCGAACCAAAAGACACTGCTGTCTTACCTTGTCGACACATGTGTATGTGCGGTGAGTGTGCACAAGCTTTGTGGCTTCAATCGAACAAATGCCCTATATGCCGTCAACCCATTGAGGAACTTATACAGATCAAGATAAACAATGGTGATTATTGGGATATTATCTCTCTTTGCTAA 1173 0.445 MGISGSSRRRDPPYFHNPPQLPSPYYYPAESPPPPPPAPQGYYYTSTSPYTMHNNSYVSYPPLSPPPQTEFFSYSNVYSSCSNYSNSMLDSVHYNPYYENHAIGWPAIDAVVGTVVSTPPYVDHRTAKRIRNDVNVHRDTLQLEVDEQNPDQHLVSFIFDAFYDGRPSVFSMQKCITILYFAKEEENCRLVPLFPDVFVPIRVSFQKGVGQKFCQPSGTGINLGFFELDGLSKPSLGEDAFPLVICAETCLTTSSAVDNLGDPMLDVFPHMQITEAIVEKGNIGSPFQVKVDRQILWTDGLRYELKELYGIGGSAAAGFDDNDTGKECVICMTEPKDTAVLPCRHMCMCGECAQALWLQSNKCPICRQPIEELIQIKINNGDYWDIISLC 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g3057 390 PANTHER MAHOGUNIN 1 382 IPR045194 GO:0061630
Sto10g3057 390 SUPERFAMILY RING/U-box 327 373 - -
Sto10g3057 390 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 327 367 IPR045195 -
Sto10g3057 390 SMART ring_2 328 366 IPR001841 -
Sto10g3057 390 Pfam Zinc finger, C3HC4 type (RING finger) 326 372 - -
Sto10g3057 390 MobiDBLite consensus disorder prediction 1 42 - -
Sto10g3057 390 PANTHER E3 UBIQUITIN-PROTEIN LIGASE LUL3-RELATED 1 382 - -
Sto10g3057 390 MobiDBLite consensus disorder prediction 15 42 - -
Sto10g3057 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 383 IPR013083 -
Sto10g3057 390 ProSiteProfiles Zinc finger RING-type profile. 328 367 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g3057 Sto-Chr10 40138188 40141432 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g3057 121 382 C3H Transcription Factor Family AT3G06140 57.795 2.93e-102 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g3057 - - vra:106775674 442.195