Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g3050 ATGATCTCTTCAGTATCGTTTCCTGCTTCCTCCACTCTTCCCTATGGGCCCTTTTCATGTTTTTGCTCCATTCTCAGCTCAACTCCTTCTGCTGAACACACCATATCATCTCCTTCCAAAGTCTTCATTAAAGGGCTTCCACTGTCAACTTCTGAAGGACGTTTGGTGAAGGCATTTTCAGAGTTTGGTGAAGTTAGTCAAGTCAAGCTTATCATGGATAAAGAATCTGGGGATTTCCTAGGATTTGCATATATTTGGTTTGCCAAGGAAGAGTCTGCACAATTAGCTGTAAAAGAGATGAATGGAAAGAACATTGAGCATGGGGCAGCAGGTAGCGTACCCTTCGGATCATTCTGGTGGTTCATCTACGCCGGTTTCTCCAGTTTTCTCGTCCTCTTTGCCGGTATCATGTCCGGTCTCACCCTCGGTCTCATGTCTCTCAGCGTCGTCGATCTCGAGATCCTTCAGCGCAGCGGTACTCCTGCTGAGAAATTGCAAGCAGGtctttctcctttccttctcattTCCGTTCCATTTTCCGCCTCAtcaaatttcttcttcttctttctggaTGGCCAAATTTCCAATGCCTATATGTTTTCCGTATTTAATTCTCCTTCTTGGCTATGCTTAGCTTCCATACTTCCTGTGGTTCAAAAGCAACACCAGCTTCTTGTCACTCTGCTGCTGTGCAATGCTTGCGCCATGGAGGCCCTTCCAATATACCTAGACAGAATATTCAATGAGTATCTTGCTATCATACTCTCTGTTACTTTTGTTCTGTTTTTTGGAGAGGTTATTCCGCAAGCAATTTGTTCACGATATGGTCTTGCTGTAGGTGCCAACGTCATATGGCTGGTGCGACTTTTAATGATAATCTGTTATCCAATTGCTTATCCAATTGGAAAGATGTTGGATTGGGTATTGGGACATAATCAGGCTTTATTTAGGCGTGCTCAGTTAAAAGCTCTTGTCTCCATCCATAGCCAGGAGGCTGGGAAGGGCGGTGAACTTACACATGATGAAACAACAATTATAAGTGGGGCACTAGATTTGACTGAAAAGACTGCTCAAGAGGCTATGACTCCTATAGAATCAACATTTTCCTTGGATGTTAATTCGAAGTTAGACTGGGAAGCAATGGGAAAAGTTTTGGCTCGTGGACACAGCCGAGTTCCTGTCTATTCTGGCCATCCAAAGAATATTATAGGGCTGCTGCTGGTCAAAAGTCTTCTCACTGTACGACCAGAAACAGAGACCCCTCTTAGTGCAGTTTCCATCCGGAGAGTTCCACGAGTACCAGCAGATATGCCTCTTTACGACATACTGAATGAGTTTCAAAAAGGTAGTAGTCATATGGCTGCTGTTGTAAAGGCTAAAGGAAAAGGAAAGACAACTCAAGTATTAGTTGAGGGACAGAAGGATGAAAACAGAAGTAGTGGGGATTCTGGGCTTACTACTCCGTTGCTACAGGAGCAGAAGTCAGAAAGTGTTATTGTGGACGTTGACATGCATTCAAACGCTCCAACCATAGAAAATGGTCTATTTCTAGATGATATTGAAGATGGTGAAGTGATAGGTATTATCACTTTAGAAGATGTATTTGAAGAACTTCTGCAGGAAGAGATTGTAGACGAAACAGATGAATATGTTGATGTGCATAAGAGgATACGTGTAGCTGCTGCTGCAGCTGCTTCCTCAGTGGCACGCTGTCCATCTATCAGGAGGTTGACTGTCCAGAAGGGAGCAGGAGGCCAAACTAAGCAAGGACAAGCACCAAGAAAATCTACAGAAGTTGACGGTTATGTTACAAGGTTACAAGGGAATTCTGTTGAGCCTATTGGGAATTGGAGATGA 1857 0.4276 MISSVSFPASSTLPYGPFSCFCSILSSTPSAEHTISSPSKVFIKGLPLSTSEGRLVKAFSEFGEVSQVKLIMDKESGDFLGFAYIWFAKEESAQLAVKEMNGKNIEHGAAGSVPFGSFWWFIYAGFSSFLVLFAGIMSGLTLGLMSLSVVDLEILQRSGTPAEKLQAGLSPFLLISVPFSASSNFFFFFLDGQISNAYMFSVFNSPSWLCLASILPVVQKQHQLLVTLLLCNACAMEALPIYLDRIFNEYLAIILSVTFVLFFGEVIPQAICSRYGLAVGANVIWLVRLLMIICYPIAYPIGKMLDWVLGHNQALFRRAQLKALVSIHSQEAGKGGELTHDETTIISGALDLTEKTAQEAMTPIESTFSLDVNSKLDWEAMGKVLARGHSRVPVYSGHPKNIIGLLLVKSLLTVRPETETPLSAVSIRRVPRVPADMPLYDILNEFQKGSSHMAAVVKAKGKGKTTQVLVEGQKDENRSSGDSGLTTPLLQEQKSESVIVDVDMHSNAPTIENGLFLDDIEDGEVIGIITLEDVFEELLQEEIVDETDEYVDVHKRIRVAAAAAASSVARCPSIRRLTVQKGAGGQTKQGQAPRKSTEVDGYVTRLQGNSVEPIGNWR 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g3050 618 ProSiteProfiles CNNM transmembrane domain profile. 116 342 IPR002550 -
Sto10g3050 618 Gene3D - 25 110 IPR012677 -
Sto10g3050 618 Gene3D - 488 546 IPR046342 -
Sto10g3050 618 SUPERFAMILY CBS-domain pair 346 540 IPR046342 -
Sto10g3050 618 Pfam Cyclin M transmembrane N-terminal domain 213 341 IPR002550 -
Sto10g3050 618 SUPERFAMILY RNA-binding domain, RBD 29 105 IPR035979 GO:0003676
Sto10g3050 618 PANTHER DUF21 DOMAIN-CONTAINING PROTEIN 96 168 - -
Sto10g3050 618 PANTHER DUF21 DOMAIN-CONTAINING PROTEIN 212 614 - -
Sto10g3050 618 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 212 614 IPR045095 GO:0010960
Sto10g3050 618 PANTHER ANCIENT CONSERVED DOMAIN PROTEIN-RELATED 96 168 IPR045095 GO:0010960
Sto10g3050 618 SMART rrm1_1 40 113 IPR000504 GO:0003723
Sto10g3050 618 CDD CBS_pair_CorC_HlyC_assoc 356 536 IPR044751 -
Sto10g3050 618 Gene3D - 342 487 IPR046342 -
Sto10g3050 618 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 118 IPR000504 GO:0003723
Sto10g3050 618 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 106 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g3050 Sto-Chr10 40091185 40099824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g3050 6 102 Eukaryotic Initiation Factors Gene Family AT1G22760 33.673 1.94e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g3050 K16302 - qsu:111994099 673.315