Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2979 ATGCCTTTAATTCGGAGCATAATCCAGGATATGAGATCTAGGTCGCATCGCGTCGTTCAGGACGGTTCGTCAATGGAGGACGAGGAGGCGCTGGATGGTTTGAAGCAGAGTTCCTGGGCCCACATGCCTCAGGAGCTTCTCAGGGAGGTCTTGCTCagaattgaggagtccgagaGCTCTTGGCCGCCGCGCAAGAGTGTCGTCGCCTGCGCCGGAGTGTGCCGGAGTTGGAGGGAGATCACGAAAGAGATCGTCAAGACGCCTGAAGTTTCCGCTAAGATCACTTTTCCCATCTCCGTTAAGCAGCCTGGCCCAAGGGAGCATCTTCTTCAGTGCTTTATAAAGAGAAACCGCTCCTCTCAAACATATTACTTGTTTCTCAGTTTAACTAATGAAGCATTAGCTGATGATGGGAAGTTTCTTTTGGCTGCTCGCAAGTGCAGACGTCCCACCTGCACGGACTATATCATCTCTCTAGATGCCGATGATATGTCAAATGGAAGCAACACCTATGTTGGGAAACTGAGATCAAATTTTCTGGGAACAAAGTTCACAATCTATGATTGCCAGCCGCCTCATGCTGGTGCAAAAATTACTAAAAGTCGCTCCACTAGGCTGGTGAATCTGAAGCAAGTTTCACCCAGGGTCCCTACGGGTAACTATCCAGTGGCACACATTTCGTACGAATTAAACGTGTTAGGCTCCAGGGGGCCTAGGAGAATGCACTGTCTCATGGATTCCATTCCTGCCTCTGCAATTGAACCAGGAGGTGTAGCCCCTACACAGACTGAGTTTTCTCTTAGCAACATTGATGTATTTCCTTCGTTTCCATTTTTTCGATCGAGATCAAATCGTTTGGAAAAATCCCTATCTGGACCTCTGGGCAATCAAAAGGATGGGGTCCTAGTGTTGAAAAACAAGTCTCCCAGGTGGCATGAGCAGCTCCAATGTTGGTGCTTAAACTTTCATGGACGAGTGACAGTCGCTTCGGTAAAAAACTTTCAGCTGGTAGCTTCTCCAGAAAGTGGTCCTGCAGGACCAGAACACGAGAAGATTATCCTCCAGTTTGGAAAAGTTGGGAAGGATTTGTTTACAATGGATTACCGGTACCCCATTTCAGCTTTTCAGGCTTTTGCTATCTGCCTCAGCAGCTTTGATACCAAGATTGCTTGTGAATGA 1179 0.4707 MPLIRSIIQDMRSRSHRVVQDGSSMEDEEALDGLKQSSWAHMPQELLREVLLRIEESESSWPPRKSVVACAGVCRSWREITKEIVKTPEVSAKITFPISVKQPGPREHLLQCFIKRNRSSQTYYLFLSLTNEALADDGKFLLAARKCRRPTCTDYIISLDADDMSNGSNTYVGKLRSNFLGTKFTIYDCQPPHAGAKITKSRSTRLVNLKQVSPRVPTGNYPVAHISYELNVLGSRGPRRMHCLMDSIPASAIEPGGVAPTQTEFSLSNIDVFPSFPFFRSRSNRLEKSLSGPLGNQKDGVLVLKNKSPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPESGPAGPEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2979 392 Pfam F-box domain 39 86 IPR001810 GO:0005515
Sto10g2979 392 ProSitePatterns Tub family signature 2. 377 392 IPR018066 -
Sto10g2979 392 SUPERFAMILY F-box domain 32 82 IPR036047 GO:0005515
Sto10g2979 392 Pfam Tub family 100 387 IPR000007 -
Sto10g2979 392 Gene3D - 32 87 - -
Sto10g2979 392 PRINTS Tubby superfamily signature 155 171 IPR000007 -
Sto10g2979 392 PRINTS Tubby superfamily signature 171 195 IPR000007 -
Sto10g2979 392 PRINTS Tubby superfamily signature 220 247 IPR000007 -
Sto10g2979 392 PRINTS Tubby superfamily signature 304 321 IPR000007 -
Sto10g2979 392 PRINTS Tubby superfamily signature 322 338 IPR000007 -
Sto10g2979 392 PRINTS Tubby superfamily signature 349 368 IPR000007 -
Sto10g2979 392 PRINTS Tubby superfamily signature 370 392 IPR000007 -
Sto10g2979 392 ProSitePatterns Tub family signature 1. 322 335 IPR018066 -
Sto10g2979 392 Gene3D Tubby Protein; Chain A 96 392 IPR025659 -
Sto10g2979 392 SUPERFAMILY Tubby C-terminal domain-like 88 392 IPR025659 -
Sto10g2979 392 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 4 392 - -
Sto10g2979 392 PANTHER TUBBY-RELATED 4 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2979 Sto-Chr10 39568757 39570983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2979 12 392 TUB Transcription Factor Family AT2G47900 73.890 0.0 578
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Sto10g2979 Tub 1.9e-112 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2979 K19600 - gmx:100778346 651.744