Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2977 TTGAGTAATCCACCTAACCATGTGCACGGCGAGCAAGTGGCGGCGGGATGGCCTTCTTGGCTCTCCAAGGTTGCAGGGGAAGCTATAAACGGCTTGACGCCTAGAAGAGCAGACACTTTTGAGAAGCTTGATAAGATTGGGCAAGGTACTTATAGTAATGTTTACAAAGCCAGAGATAATCTAACTGGGAAAATTGTTGCCCTAAAGAAGGTCCGTTTTGACAATTTGGAACCAGAGAGTGTGAAATTCATGGCCAGAGAGATTCTCATATTACGTCGTCTGGATCATCCCAATGTTGTCAAACTAGAAGGTTTAGTGACTTCTAGAATGTCATGTAGTTTGTATCTTGTGTTTCCATACATGGAGCATGATTTGGCTGGACTTGCTACAAGCCCAACAATTAAGTTCACTGAACCTCAGGTTAAATGTTACATGAAGCAGCTGTTTTCTGGTCTGGAACATTGTCACAACCGTCATGTGCTGCATCGTGATATAAAGGGGTCAAACCTTCTTATTGATAACGAAGGAATTCTTAAAATTGCTGATTTTGGCTTAGCTTCCTTCTTTGATCCTAATCACAAACACCCAATGACAAGTAGGGTGGTGACTTTATGGTATCGACCTCCAGAACTTCTTCTTGGGGCCACTGATTATGGTGTAGGAGTGGACCTATGGAGTGCTGGCTGTATTCTTGCTGAATTGTTGGCTGGAAAGCCTATATTACCAGGTCGAACAGAGGTGGAGCAATTACATAAGATATTTAAGCTATGTGGTTCTCCTTCTGAAGAGTATTGGAAGAAGTCAAAGTTGCCACATGCTACCATTTTTAAGCCCCAACAATCATACAAGCGCTGCATATCAGAGGTATTTAAAGATTTTCCACCATCGTCCTTGCCATTAATTGAGACCCTTCTAGCAATTGATCCAGCTGAACGTCAGACTGCCACTGCTGCATTGCAAAGTGAATTCTTTATGACAAAACCTTATGCTTGTGAGCCATCTAGCCTTCCGAAATATCCTCCCAGCAAGGAGATGGATGCAAAGCTACGAGATGAAGAAGCTAGAAGGTAG 1071 0.4295 LSNPPNHVHGEQVAAGWPSWLSKVAGEAINGLTPRRADTFEKLDKIGQGTYSNVYKARDNLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFPYMEHDLAGLATSPTIKFTEPQVKCYMKQLFSGLEHCHNRHVLHRDIKGSNLLIDNEGILKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPILPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQSYKRCISEVFKDFPPSSLPLIETLLAIDPAERQTATAALQSEFFMTKPYACEPSSLPKYPPSKEMDAKLRDEEARR 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2977 356 SMART serkin_6 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto10g2977 356 CDD STKc_CDK9_like 40 324 - -
Sto10g2977 356 Gene3D Phosphorylase Kinase; domain 1 28 122 - -
Sto10g2977 356 Pfam Protein kinase domain 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto10g2977 356 ProSiteProfiles Protein kinase domain profile. 40 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sto10g2977 356 PANTHER OS01G0367700 PROTEIN 5 356 - -
Sto10g2977 356 SUPERFAMILY Protein kinase-like (PK-like) 35 329 IPR011009 -
Sto10g2977 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Sto10g2977 356 PANTHER CELL DIVISION PROTEIN KINASE 5 356 - -
Sto10g2977 356 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524
Sto10g2977 356 MobiDBLite consensus disorder prediction 331 356 - -
Sto10g2977 356 Gene3D Transferase(Phosphotransferase) domain 1 123 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2977 Sto-Chr10 39556477 39558849 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2977 35 356 Core Cell Cycle Gene Families AT5G10270 52.959 2.70e-119 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Sto10g2977 Pkinase 1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2977 K08819 - qsu:112028230 691.804