Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2965 ATGTCTTATCGCTTTCACAAATCTGCGTTATACCTCAATCCTTTCATGCGAACTTCACCAATCCCATGGCTATGTGTTCTTCTTCCTCGGCATTATTGGAGCACCATCGCAAGCAAGAGGCACTCTTTCAGGTTGAATTACCTCATCAACAATTGTGGATTCTCCCCAAAATCCGCATCGGAGCTTTCCAAACAGGTCTCTTTCATTAACTCTGATAAACCTGACGCTGTTCTTAATCTTTTTCGCAACCTTAATATTTCCGATTCTAAGATCCGCGATCTCATTAGAAAAGCACCTTGTGTTCTTTCCAGAAACCCTACCAAGTCAATTTCGCTCACCCTCGAGTTTCTCAGGTCTAAAGGTGCTTCAGATTCCCAAATTGTTCATATTATTACTAGTAATCCATGGTCATTACACAAAACTTTAGACAAGTGTATAATTCCTCGTTATGACTTGATAAGAAGTTTCGTTCAGTCTGATGAAAAGACCTTAGTGTCTATAAAACGCTATCCTAGAATCCTTGATAATTCTAACCTGCCACATCTTGTTAGAGTTATGCTTGATACTGGGGTGCCTGATTCAGGCATTAATCTGGTACTTCGGTCTTGGCCTGAAGTATTCAACTTCCATGTAGATGAGTTTAAATCCAAGGTAGATGAAGTAAAGGCATTGGGATTTGATCCATCAAAAACATATTTCTTAGAAGCATTGCGCACCAAATTGATTTTAGGCAAAACAGGATGGGAAAGAAAGGTTGAATTGTATGGGAGGTGGGGTTGGTCGGATGAAATGATTTTTAAAGCATTTAGTAAGCGACCTTTCTGTATGTTGACTTCTGACAGTAAAATTGAGGCCGTGATGGATTTTTTTGTCAACCACATGGGTTGGGACTCTTCAGCTCTTGTTGAATACCCAATACTTCTTGGTTATTCTTTGAAGAAAAGAATAGTTCCTAGGGCTTCTGTATTGCTGTTTCTTCAGTCTAAAGGTTTGATTAAGAAGAAAGTTTGCTATGGCCCCTTTTTGAGGACTGAAGAGCTGTTCCTCCAGAAATTTGTCAATTGCTTTAAGGATGAAGCTCCTCTGTTATTGACGCTCAGAGCTGCTGCAGCAACGCGCAATCCAGAGAGAGAGTCATTTACAGTGAACTACCTCGTCGGAAGTTGTGGATTTTCCCCTGAAGACGCATCGGCGATTTGGCATCGCATCCCTCTCAAGTCCTCGGAAAACCCCGACTCTGTCATCGCCCTTTTCAAAAGCTGTGATTTCTCAGAGTCTCAGATTCGCGACATCATCAGGAAGGCACCCGGATTACTCATGAGTGATCCTGTTCAGACCATTTGGCCTAAGCTTGACTTTTTGCTCTCCAAAGGTCTTTCTTGCTCTGATCTTGTTAAATTGGTAACCAAAAGTCCTCTGTTTTTGTTGAGAAGCTTAGATAATCATATAATTCCTTCTTATGATTTTGTTAAAGAATTTGTTGGATCTGATGAGAAGACCATCACTTCAATAAAAAGAGGCAATAATATCATTAGTGGTAGTGCCCTGAAAACTAATATTAAAATCATGCTTGACATTGGAGTTCCCAAATCTGGAATTGTTGGATTGCTTAATTCATGGCCTGCATTGCTTACAGTGGACTTAGGAAGGTTTAAACCGGCCATTGAAAAAGTAAAGGAATTGGGGGTTGATCCTTCAAAGGCAGCTTTCATTCCTGCTTTGTATACCACAATtatgttaagaaaatccaattggAATAGTAAGGTTCAGTTGTATAAGAAGTGGGGGTGGTCTGATGAAGAGATCAATAAAGCATTTCTCTCGCATCCTAATTGTATGCTAAAATCTGCATCTAAGATTACGGCAGTGATGGAATTTTTTGTGGAAAACTTGGGTTGGGACTCTCATGTGCTGGCCACTAACCccatttttatatctttgagtTTGGAGAAAAGACTCATTCCAAGAGCTTTTGTGTTGCAATATCTTCATTCAAGAGGTTTAATTAAGAATCCCCGTATTGTGTATCCATATTATATATCTGAAAATTTGTTCCTTGAGAAATTTGTCATTCGTTTTGAGAAGGAGCATGAATCTCCTGGGTTAATGAAGTTGTATgaagagaaaatgaatatttcACGATGA 2145 0.3874 MSYRFHKSALYLNPFMRTSPIPWLCVLLPRHYWSTIASKRHSFRLNYLINNCGFSPKSASELSKQVSFINSDKPDAVLNLFRNLNISDSKIRDLIRKAPCVLSRNPTKSISLTLEFLRSKGASDSQIVHIITSNPWSLHKTLDKCIIPRYDLIRSFVQSDEKTLVSIKRYPRILDNSNLPHLVRVMLDTGVPDSGINLVLRSWPEVFNFHVDEFKSKVDEVKALGFDPSKTYFLEALRTKLILGKTGWERKVELYGRWGWSDEMIFKAFSKRPFCMLTSDSKIEAVMDFFVNHMGWDSSALVEYPILLGYSLKKRIVPRASVLLFLQSKGLIKKKVCYGPFLRTEELFLQKFVNCFKDEAPLLLTLRAAAATRNPERESFTVNYLVGSCGFSPEDASAIWHRIPLKSSENPDSVIALFKSCDFSESQIRDIIRKAPGLLMSDPVQTIWPKLDFLLSKGLSCSDLVKLVTKSPLFLLRSLDNHIIPSYDFVKEFVGSDEKTITSIKRGNNIISGSALKTNIKIMLDIGVPKSGIVGLLNSWPALLTVDLGRFKPAIEKVKELGVDPSKAAFIPALYTTIMLRKSNWNSKVQLYKKWGWSDEEINKAFLSHPNCMLKSASKITAVMEFFVENLGWDSHVLATNPIFISLSLEKRLIPRAFVLQYLHSRGLIKNPRIVYPYYISENLFLEKFVIRFEKEHESPGLMKLYEEKMNISR 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2965 714 Gene3D Transcription termination factor 3, mitochondrial 167 360 IPR038538 -
Sto10g2965 714 Gene3D Transcription termination factor 3, mitochondrial 394 513 IPR038538 -
Sto10g2965 714 Gene3D Transcription termination factor 3, mitochondrial 514 699 IPR038538 -
Sto10g2965 714 Pfam mTERF 416 564 IPR003690 GO:0003690|GO:0006355
Sto10g2965 714 Pfam mTERF 180 335 IPR003690 GO:0003690|GO:0006355
Sto10g2965 714 Pfam mTERF 78 285 IPR003690 GO:0003690|GO:0006355
Sto10g2965 714 Pfam mTERF 516 674 IPR003690 GO:0003690|GO:0006355
Sto10g2965 714 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 372 711 - -
Sto10g2965 714 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 36 367 - -
Sto10g2965 714 SMART mt_12 197 227 IPR003690 GO:0003690|GO:0006355
Sto10g2965 714 SMART mt_12 266 297 IPR003690 GO:0003690|GO:0006355
Sto10g2965 714 SMART mt_12 534 564 IPR003690 GO:0003690|GO:0006355
Sto10g2965 714 SMART mt_12 603 634 IPR003690 GO:0003690|GO:0006355
Sto10g2965 714 SMART mt_12 128 159 IPR003690 GO:0003690|GO:0006355
Sto10g2965 714 SMART mt_12 429 460 IPR003690 GO:0003690|GO:0006355
Sto10g2965 714 SMART mt_12 164 192 IPR003690 GO:0003690|GO:0006355
Sto10g2965 714 SMART mt_12 92 123 IPR003690 GO:0003690|GO:0006355
Sto10g2965 714 SMART mt_12 298 332 IPR003690 GO:0003690|GO:0006355
Sto10g2965 714 SMART mt_12 465 496 IPR003690 GO:0003690|GO:0006355
Sto10g2965 714 SMART mt_12 635 669 IPR003690 GO:0003690|GO:0006355
Sto10g2965 714 PANTHER CGI-12 PROTEIN-RELATED 36 367 IPR003690 GO:0003690|GO:0006355
Sto10g2965 714 PANTHER CGI-12 PROTEIN-RELATED 372 711 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2965 Sto-Chr10 39458015 39462504 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Sto10g2965 mTERF 2.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2965 K15032 - dcr:108199961 307.375