Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2962 ATGTACGCTTGTTATCGCAAATCGGTTCTCTTCCTGAAGGCTTTTACACGAACCTCATCGATTTCACTGCTACGTAGTCCATCCCCATTGGTGCATAGTTGCAGCACAGCCACAAGCACCCCAGAGAAGCTGTGTTTCAGGACGAACTACCTCATCAACACTTGTGGGTTCTCCCCAGAAAAGGCATCACAACTTTCCAGGCATGTCTCTTTTGTTAAATCAGAGAGTCCCGATGCTGTTCTTGACCTCTTAAAATCCCTTGATATTTCGGATCTTCAGATACGTGGTATCATTAAGAAGGCACCTTGGCTTCTTTCATGCGATCCCGTAAGGACCATTGCACCCAAGATAGAGTTTTTTAAGTCTAAAGGAGCTTCAAGCTCTCAACTTGCTCGGATAGTGATCTTTAACCCCTGGTTCCTTCACAAAAGCTTAGAGAATCATATAATCCCTATTTATGATTTGTTGATAAGCTACCTTCATACCGATAAAAGAACCGTTACGTCTTTACAACGCTATTCCACAATGGTCAGTGATTGTTACCTGGTTCAAAAAGTTCAGCTCTTGCATGATTATGGGGTGCCTAAGTCAGGCATTGCTCGGCTAATAAGTCATTGGCCTCAAGTACTCAGCTGTAATGTGGATAAGTTGAAAATGGTAGCCGATAAATTAATGGAAATGGGATTACATCCTTCAAAATCAATTTTCCTAGATGCATTGCGCACCAAAGTAAGAGTAAGCAAATCCTCGTGGGAAAGTAAGGTTGAATTGTATAGGAGGTGGGGTTGGTCTGATGAAACACTTGTTGAAGCATTTAATAGGGGACCTGTCTGTATGGTGGCATCTTGCGGTAAGATTGATGCAATGATGGATTTTCTCGTCACCCGCATGGGTTGGGACTCTTCTTATCTTGCTAAAAACCCAACACTTCTTAATTATTCTTTAGAGACAAGAGTGGTTCCTAGGGCGTTTGTCTTGCAGTTTCTTCAATCTAGAGGTATGATTCAGAAGATTACTAGCTATTACCCCTTTGCTGTTTCTGAAGAGATGTTCCTCCGGAAATTTGTCTATCACTTTAAGGATGAAGCTCTTGTGGATATAAACAAGGGGTTGAAATTACTGACAGGAAATTCCGAATACTATAGAAGTGTGGTCAAGCGTGTGTTTAAAAGAGCGGAAACTGCAACTAAAGCTGAGATGTTGCTTGATACAATGATCCTATCAATACTCTGTCAATCTCTTGTTAAATTACAGCATGCTTTGCAAGTCTCACTTGAGCATAGGCAATCAATGTCACTTTTGAGATCTTCAGCTGCCTTGTCTTGCCTATGGCAACGTTAG 1341 0.4161 MYACYRKSVLFLKAFTRTSSISLLRSPSPLVHSCSTATSTPEKLCFRTNYLINTCGFSPEKASQLSRHVSFVKSESPDAVLDLLKSLDISDLQIRGIIKKAPWLLSCDPVRTIAPKIEFFKSKGASSSQLARIVIFNPWFLHKSLENHIIPIYDLLISYLHTDKRTVTSLQRYSTMVSDCYLVQKVQLLHDYGVPKSGIARLISHWPQVLSCNVDKLKMVADKLMEMGLHPSKSIFLDALRTKVRVSKSSWESKVELYRRWGWSDETLVEAFNRGPVCMVASCGKIDAMMDFLVTRMGWDSSYLAKNPTLLNYSLETRVVPRAFVLQFLQSRGMIQKITSYYPFAVSEEMFLRKFVYHFKDEALVDINKGLKLLTGNSEYYRSVVKRVFKRAETATKAEMLLDTMILSILCQSLVKLQHALQVSLEHRQSMSLLRSSAALSCLWQR 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2962 446 PANTHER CGI-12 PROTEIN-RELATED 39 363 IPR003690 GO:0003690|GO:0006355
Sto10g2962 446 Pfam mTERF 81 172 IPR003690 GO:0003690|GO:0006355
Sto10g2962 446 Pfam mTERF 177 351 IPR003690 GO:0003690|GO:0006355
Sto10g2962 446 Gene3D Transcription termination factor 3, mitochondrial 170 362 IPR038538 -
Sto10g2962 446 SMART mt_12 131 163 IPR003690 GO:0003690|GO:0006355
Sto10g2962 446 SMART mt_12 301 335 IPR003690 GO:0003690|GO:0006355
Sto10g2962 446 SMART mt_12 200 230 IPR003690 GO:0003690|GO:0006355
Sto10g2962 446 SMART mt_12 269 300 IPR003690 GO:0003690|GO:0006355
Sto10g2962 446 SMART mt_12 95 126 IPR003690 GO:0003690|GO:0006355
Sto10g2962 446 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN 39 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2962 Sto-Chr10 39437273 39439535 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Sto10g2962 mTERF 1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2962 K15032 - gmx:102663105 265.388