Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2960 ATGGCTCTCCTTCTCAGTCTCCCTTTCCATCTCACCAGTCACCACCGATCCTTTTTCCGATCTCGCGTCGGACTTCGCCGGAAGCTACCCTATCTGATCTTCTCGGATTGTGAAGTCATCCTTGAGCTTCGAGCTTGCCTCTTCACTCTCCTCAAGAAACACGCATCAGCTCGCTCTTCGTCTTTGCAATCTCGCTCTCCTGTCTCTTCTGTTTTACAAACTCCAGCACGTTACGACTTACGAGACTTGGCCACATCGGCCATTCCTTCTCGAGTCCTCGGAAAACCCACACACACTCAGGTGCACGACATCACAACAATGTACGCTTGTTACCGCATCTCGCTTCTCTTCCTGAAAGCTTTTACACGAACCTCGTCAATCTCACTGCTACGTGTTCTTCCTAAACCTAGCCCATCCCCATTGGCGCACAGTTACAGAACAACCGAAAGCGCCTCCGAGAAGCAGTGTTTAAGGACAAACTACCTCATCAACAGTTGTGGCTTCTCCCCAGAAAACGCATCACAACTTTCCAGGGTTGTCACTTTTGTTAAATCAGACGCTCCTGATGCTATCCTCGAGCTCTTAAAATCCCTTAATCTTTCGGACTCTATGATACGTGATATCATTAAGAGGGCACCTCAGATTCTTTCATGCGATCATGCAAGGACCATTACGCCCAAGATTGAGTTTTTTAAGTCTAAAGGCGCTTCAAGCTCTCAACTTGCCCAGATGGTGACCCATAACCCCTGGCTCCTTCACCACAGCTTAGAGAATCAGATAATCCCTAATTATGATTTGATGAGAAGCTTACTTCATTCTGATGAAAAGACCGTTACGTCTATACAACGCAGTTCCACAATTGTCACTGATTATTACCTGGCTCAAAAAGTTAAGCTATTGCATGATTACGGGATGTCTGAGTCACGCATAGCTCAGGTAATTGCATATTGGCCTATACTACTTAGCCGTTCTGTGGATAAGTTGAAAATGGTAGCAGATGAATTAACGGAAATGGGATTTCATCCTTCAAAATCAACTTTCATGGAGGCATTGCGCACCAAAGTAGTAATAAGCAAATCCTTGTGGGAAAGAAAGGTTGAATTGTATAGGAGGTGGGGTTGGTCTGATGAAACAATTCTTGAAGCATATATGAAGGGACCTGTCTGTATGGTGGCATCTTGTGGTAAGATTGATGCAGTGATGGATTTCCTTGTCACCCGCATGGGTTGGGACTCTTTTTATCTTGCTAAAAACCCAAGagttcttaatttttctttagagAAAAGATTGGTTCCTAGGGCGTTTGTCTTGCAGTTTCTTCAATCTAGAGGTTTGATTAAGAAGGTTACTACCTCTTCCCCCTTTGTTATTTCTGAAGAGATGTTCCTCCAGAAATTTGTTAATTGCTTTAAGGATGAAGCTCCTCAGTTATTGAAGCTGTATGAAGAGAAATTGAATCTTTTGAGATGA 1470 0.4347 MALLLSLPFHLTSHHRSFFRSRVGLRRKLPYLIFSDCEVILELRACLFTLLKKHASARSSSLQSRSPVSSVLQTPARYDLRDLATSAIPSRVLGKPTHTQVHDITTMYACYRISLLFLKAFTRTSSISLLRVLPKPSPSPLAHSYRTTESASEKQCLRTNYLINSCGFSPENASQLSRVVTFVKSDAPDAILELLKSLNLSDSMIRDIIKRAPQILSCDHARTITPKIEFFKSKGASSSQLAQMVTHNPWLLHHSLENQIIPNYDLMRSLLHSDEKTVTSIQRSSTIVTDYYLAQKVKLLHDYGMSESRIAQVIAYWPILLSRSVDKLKMVADELTEMGFHPSKSTFMEALRTKVVISKSLWERKVELYRRWGWSDETILEAYMKGPVCMVASCGKIDAVMDFLVTRMGWDSFYLAKNPRVLNFSLEKRLVPRAFVLQFLQSRGLIKKVTTSSPFVISEEMFLQKFVNCFKDEAPQLLKLYEEKLNLLR 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2960 489 Pfam mTERF 192 285 IPR003690 GO:0003690|GO:0006355
Sto10g2960 489 Pfam mTERF 292 462 IPR003690 GO:0003690|GO:0006355
Sto10g2960 489 Gene3D Transcription termination factor 3, mitochondrial 171 289 IPR038538 -
Sto10g2960 489 Gene3D Transcription termination factor 3, mitochondrial 290 480 IPR038538 -
Sto10g2960 489 SMART mt_12 242 273 IPR003690 GO:0003690|GO:0006355
Sto10g2960 489 SMART mt_12 380 411 IPR003690 GO:0003690|GO:0006355
Sto10g2960 489 SMART mt_12 311 341 IPR003690 GO:0003690|GO:0006355
Sto10g2960 489 SMART mt_12 412 446 IPR003690 GO:0003690|GO:0006355
Sto10g2960 489 SMART mt_12 206 237 IPR003690 GO:0003690|GO:0006355
Sto10g2960 489 PANTHER CGI-12 PROTEIN-RELATED 147 486 IPR003690 GO:0003690|GO:0006355
Sto10g2960 489 PANTHER TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 147 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2960 Sto-Chr10 39430279 39434429 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Sto10g2960 mTERF 1.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2960 K15032 - gmx:102663105 277.715