Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2959 ATGGAGCGGTACGGCCGGACCAGTGAAGGGTCGCAATCTGATCCGTCACCGGAATGGACCGGAGCGGGAGGCGAAACCGGGCTTGAAGAGTCCGTGTGGCAATTGGGATTGGGCGGTGGGGAATTGTATCCGCAACGACCCGATGAGGCTGATTGTATCTACTATTTGAGGACTGGCTTTTGTGGGTATGGCTCGCGGTGTCGGTTCAATCATCCTCGTGACCGTGGCGCGGTTATTGGAGCTGCTAGGACTGGAGGGGAATATCCGGAACGAGCAGGCCAACCTGTGTGCCAgTACTATATGAGGACAGGATCATGCAAATTTGGCCCATCCTGCAAGTACCACCATCCTAGGCAGGGAGGAGGCACTATTAGCCCTGTGTCACTAAATTATTATGGATATCCATTGCGACCgGGTGAGAAAGAGTGTTCTTATTATGTGAAAACGGGACAATGCAAGTTTGGTGCAACCTGCAAGTTCCATCATCCACAGCCTACTGGCGTCCAAATTCCAGCTCAATCTCCAGTTCCCCCCGTTTCACCACTTCCTGTACCAGTACCTCCTCCTTTATATCAATCTGTGCAGCCTCCATCTGGTCCTTCATCACCACAATATGGTGTAATGGTTGCAACTGCAAGGCCACCTATGATACCTGGCTCATTAGTCCATAGCCCGTATGGGCATGTGGTTTTGTCACCTGCCATGGTCCCTTTTCCAGGTTGGAATCCCTATCAGCCTCCTGCAAGCCCTTTAGGTCCTTCGAGTACTCCATCCAATGTTGGTTCAACACAGCTTTATGGGATGAGCCAGCAACCTTCATCAGCACCTACCTACACTGGACAGTACCAACCTTCAGGTTCATCAGTTGGTCCATCAGGCAGTAGTCAGAAAGAACACTCATTTCCAGAAAGACCTGGTCAACCGGAATGTCAGTATTATTTGAAAACAGGGGAGTGTAAATTTGGTCCATCTTGTAGATATCATCATCCACCCGAACTAATTGCCCCAAAAATGAATGTGAACCTTAGTCCTGTTGGCCTTCCTTTGCGGCCGATCATTCATTGCTTTTCTGGTCTTCAGGCCACAATGTTTTATCGTTCAGTGGGGGCACCACCTTGCACTCATTATGCCCAGCGTGGAGTATGTAAATTTGGTCCAGCATGCAAATTTGATCATCCTATGGGAGCACTGAGTTATAGTCCATCTGCTTCTTCCTTGGCTGATATGCCAGTTGCACCCTATCCTGTGGGTTCATCTATTGGCACTCTTGccccatcatcttcatcatccgaGTTGCGGCCTGAACTTGCCTCAGGATCCAGCAAGGAGAGCGTATCATCCAGAATGTCGTCATCAATGAGCACATCATCGGGGTCAGTTGGCTTAACTTTGTCATCTGGTGGATCCATTTCTCAATCAAGTGCTCAACAATCTGCTCAGAGTTCAAGTCCAGCTGTAGTTACCAGTGGCACTATAAGCAGCACTGTCTCTCACACTTCAAGCTAA 1506 0.4854 MERYGRTSEGSQSDPSPEWTGAGGETGLEESVWQLGLGGGELYPQRPDEADCIYYLRTGFCGYGSRCRFNHPRDRGAVIGAARTGGEYPERAGQPVCQYYMRTGSCKFGPSCKYHHPRQGGGTISPVSLNYYGYPLRPGEKECSYYVKTGQCKFGATCKFHHPQPTGVQIPAQSPVPPVSPLPVPVPPPLYQSVQPPSGPSSPQYGVMVATARPPMIPGSLVHSPYGHVVLSPAMVPFPGWNPYQPPASPLGPSSTPSNVGSTQLYGMSQQPSSAPTYTGQYQPSGSSVGPSGSSQKEHSFPERPGQPECQYYLKTGECKFGPSCRYHHPPELIAPKMNVNLSPVGLPLRPIIHCFSGLQATMFYRSVGAPPCTHYAQRGVCKFGPACKFDHPMGALSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELASGSSKESVSSRMSSSMSTSSGSVGLTLSSGGSISQSSAQQSAQSSSPAVVTSGTISSTVSHTSS 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2959 501 MobiDBLite consensus disorder prediction 249 307 - -
Sto10g2959 501 MobiDBLite consensus disorder prediction 1 25 - -
Sto10g2959 501 PANTHER PROTEIN PHOSPHATASE RELATED 1 490 - -
Sto10g2959 501 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 490 - -
Sto10g2959 501 MobiDBLite consensus disorder prediction 423 501 - -
Sto10g2959 501 SUPERFAMILY CCCH zinc finger 370 397 IPR036855 GO:0046872
Sto10g2959 501 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 371 394 IPR000571 GO:0046872
Sto10g2959 501 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Sto10g2959 501 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 331 IPR000571 GO:0046872
Sto10g2959 501 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 164 IPR000571 GO:0046872
Sto10g2959 501 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 118 IPR000571 GO:0046872
Sto10g2959 501 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
Sto10g2959 501 SUPERFAMILY CCCH zinc finger 139 165 IPR036855 GO:0046872
Sto10g2959 501 ProSiteProfiles Zinc finger C3H1-type profile. 367 395 IPR000571 GO:0046872
Sto10g2959 501 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
Sto10g2959 501 SUPERFAMILY CCCH zinc finger 308 332 IPR036855 GO:0046872
Sto10g2959 501 Gene3D - 45 122 - -
Sto10g2959 501 ProSiteProfiles Zinc finger C3H1-type profile. 137 165 IPR000571 GO:0046872
Sto10g2959 501 Gene3D - 123 171 - -
Sto10g2959 501 SUPERFAMILY CCCH zinc finger 94 119 IPR036855 GO:0046872
Sto10g2959 501 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Sto10g2959 501 SMART c3hfinal6 367 394 IPR000571 GO:0046872
Sto10g2959 501 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Sto10g2959 501 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Sto10g2959 501 SMART c3hfinal6 137 164 IPR000571 GO:0046872
Sto10g2959 501 MobiDBLite consensus disorder prediction 254 301 - -
Sto10g2959 501 Gene3D - 293 396 - -
Sto10g2959 501 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Sto10g2959 501 SUPERFAMILY CCCH zinc finger 48 74 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2959 Sto-Chr10 39407630 39413513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2959 1 463 C2H2 Transcription Factor Family AT5G18550 55.789 3.25e-155 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto10g2959 zf-CCCH 2.9e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2959 - - gmx:100789405 650.588