Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2956 ATGAGagtaaaaagaagaataaagcTTAAAAAGCAGAAAAATGGAGTTCAACTCACCTCCTCCACCATTTTTGAAGCACCACAAGATGGAAAAGTAGAAAAGAGacaaaagaagacaaaagaGTGTTCTTGTGGACTGACTGGCGACGAGACTCTGTCAACCGGTGATGATGATAGTGGCCAACAGTGGCTCCGACGTGATTTCGTGTTTACTTCTGCACCTTCTCTTCATCGCGCTCTCGCCATCTACCAAACTACACCATCACTAGCTGGAAAACTGGGATCGATAGGGGAGAAGAAGGCGAAATCGTTGAGTTTTGTTCTTGGTTTCGATCCTCTGAATGGacctaaactgagGAATTTAAGGAAAGTACTCATGGCTCCATCTAGAAAATCGAGAAGTGTCAATAAGAGGTTGTCTAATATTCGTGAAGCTGCATCTAATAAAGACAAAATCATAGAAAATGTTAGCAAAACTAGGCAGCATGGGAGTCCAGGCACGCAGAAGAAGAGAAAATTGACTGACATGTTAGGGCCTCCGTGGAGTGAGGATGAACTTGAGCATTTCTATGAAGCTTACCGTAAATATGGGAAAGATTGGAAGAAGGTTGCTGTTGCTGTACATAATAGATCTTTGGAAATGGTAGAAGCTCTGTACAACATGAATCGAGCATACTTGTCTCTTCCAGAGGGAACTGCTTCTGTGGTTGGACTCATAGCAATGATGACAGATCATTATAGTGTACTGGGAGGAAGTGATAGTGGACAAGAAAGCAATGAAGAAACAGAAACATTTAAAAAGCCTAAAAAACGATTGCGGGGAAAGTGTTTATATGACAGCTATAAAGCATCAGATGGGCATTTTTCAGATCCTTCTCAGACTCATTCAGTTGCATCAAGTGATGGTTGCCTGTCATTGTTGCAGAAGAAACATTCTGgaATTAGGCCTCATGCTGTTCGAAAAAGGACTCCTCGTGTCCCTGTTTCATATTCCTATGGTAAAGATGCCAGGCAAAATTATAGGCAAATGGTTGATAGTAATGATGTTGCTCATAAGATTGCATTAGCATTGACAGAGGCTTCACAAAGAGGTGGCTCTACCAAAGTTTCTGGCACACCAAACAATAAATCTAAGGGCGCTATGCCATCTCCTGGTCAGACCATTGGGAGGAAGCATGCTAAAGCAGAAATGGCAGGAGCCAAGTTTTCCCATTCTGACTTGAATGAGGGTAGCTCTGAATTGAGTTTAGGAAGCTCAGAAGGTGATGATGGAGAATATTCTAGAAAATTTAGTCAGTTGAGTGGTAGAGAAAGTTCTCGAAGAGGGAAGAatcaagaaaaggaaaagagatgCCACAGAAAGAAGTTAGAACATGAAGAAAATGCAAATAAACATTTGGATGACGTAAAGGAAGCCTCCAGTGGGACAGATAAGGGTAAAAGACTGGGTTCTGTCAAGTCTAAAATTGACACTGCTTTTGCAAGTGCAGAAAATGCTAGGTCATCTTTCAAGGGTTTCAGGAAGACAAGTAAGAAAGTACTGTTTGAACAAGATGAAGGTTCTTCCTTTGATGCTTTGAAAACTCTGGCTGATCTGTCTTTGATGATGCCAGTAACAAACCCTGACACTGAGTCATCTGTTCGGGTGATGGAAGACAAACATGATGTTATTGATGGGTCTAAAGTGGAAGCACATGCATGTCCAAGGGATGAAACCGCTGCTTTAAGTAAATTGGCCAAAGTCTCTTCTGATAATGGAGTTTCTGTTTCTCCAGCAGCTTTCCAGCTTGATGCTGGAATGAAGAAAAGGAGACAAAAATCTCTAATGTCAAAAGCTACTGATGAGGGAAACAAGTCTGTCGTTAAACGTAAGCGCACATTTCTTTCTACAGTGCTGTCAAGACAATTAAAGGCAGTGAAACACCCAGGAAAGATGCCTTCAAGTACTGATGAAAAAGGGGAAAGGGGTAATTTATCTTTATCTCCTATAAAAATTTCATCTACAAATGAAGTCAATCTGGCAAACAAGGGAAGGTATAGACGAAAGATGGAAAAACCAAAACCAATGGTAGAACAAGATGCAAAGGTGTCAGAAAATTTTTTTAGTGGTCAACATAAATCCGTTCCCCAGAACAGTTCATTAAATCACAAGGAAAGGCTTATTCATTGCCTGTCTTCGCATCAAATACGGAGATGGTGCACTTTTGAGTGGTTTTACAGTGCTATAGATTACCCATGGTTTGCAAAAAGGGAGTTCATGGAGTACTTGGACCATGTTGGATTGGGTCATGTTCCTAGATTGACTCGTATTGAGTGGGGCGTCATCAGGAGTTCTCTTGGCAGACCACGGAGATTTTCTGAGCAATTTTTGATAGaagaaaaaactaaattaaatcaatACCGCGATTCTGTTAGAAAGCATTATGCAGAACTTCTTGCTGGTACCAGAGTAGGCCCTCCAACTGATATGGCCAGGCCATTAATTGTTGGACAGCGTGTTATTGCTATTCATCCAAAGACGAGAGAGATTCATAATGGAAGCATACAAACTGTTGACAATTGTGGATGTCGGGTTCAGTTTGACCAGCCTGAACTGGGTGTTGAATTTGTCATGGATATTGACTGCATGCCTCTGAATTCTAAACTGAATCTGCCTGATTCTCTTCAAAGGCTCAATTTGATTCCTAAACTAAACGAGAACCTTATTGGGCTCGTGCTAAATGGGAAACAGCAAGAAGGAAAAATAGAAGAGCACAGGATATTGTCTCCTGGTGAGAACTCGGATAATATTGAAGCTCTTTATATTCCTCCCTCTACTCAAGGCATCAACAGTTTATCCAAACAGggaATTTCTTTGAGCTCCAAATCACAAGCTAATGTTTCCTGCAGTGAGATTGGGAATGCCCAAGTGTCGGTGAGTTCTCAAGCTTGCTATCTTGAACATGCCCAATCCAAAAAGGCCAGCATACTGGCTGTTTCTGAGCTGACACGTGCTCTTGAAAAGAAGGAACTTGCGTTGTCTGAACTGAAGCGCTTGAATGATGACGCATCGGAAAGCCAGAAATATGGGGATAACTCTTTAAAGGATTCAGAGCCATTTAAGAGGCATTATGCTGCAGTTCTGTTGCAGTTAAATGAAGTGAATGAACAAGTTTCTTCTGCCTTGTTTTGTTTGAGACAGTGCAACACATATCAAGGGAGCTCCTCCATTTTGTCACTAAAGCCCATGGCTAACTCAGATGATCCTGGTGGTCAAGCTAGCTCTTCAAATTGTTCAGCTTGTCACAACCAAGATTTAAAATCTCATATAGCTGAAATAGTTGATAGTTCTAGAACAAAAGCCCGAACCATGGTTGTTGCAGCTATGCAGGCGATGTCATCTATTAGTAAGACTGAAAATAAAGTTGAAGGAATTGAGGAggcaattaattttataaataataggCTTTCAGCGGATGACCTTGCTGCTCCCGCCATGCAATTCATGCCCACTGATTCTGTTCACGTCACTCTAGCTTCTCAGGATCAGTTGAACTCTAGTAAATTAAATCGCTTGCCAAATAGTCATGTAGAAGATCCTGAACTAAAGAGTTCATCTGACCAAAATGAAGTGAAAATTCCCTCCGACCTTATTTCTCACTGTCTGGCTATGCTGCTCATGATTCAGAAGTGTACAGAACGACAAGTTCCCCCTGGTGATGTTGCTCACTTACTAGATTCTGCTGTCACCAGTTTGCAGCCATTCTGTTCAAAGAATTTACCAATATATGGAGAGATACAGAAATGCATGGGTATCATAAGAAATCAGATCTTGGCACTCATACCTACCTAA 3831 0.4028 MRVKRRIKLKKQKNGVQLTSSTIFEAPQDGKVEKRQKKTKECSCGLTGDETLSTGDDDSGQQWLRRDFVFTSAPSLHRALAIYQTTPSLAGKLGSIGEKKAKSLSFVLGFDPLNGPKLRNLRKVLMAPSRKSRSVNKRLSNIREAASNKDKIIENVSKTRQHGSPGTQKKRKLTDMLGPPWSEDELEHFYEAYRKYGKDWKKVAVAVHNRSLEMVEALYNMNRAYLSLPEGTASVVGLIAMMTDHYSVLGGSDSGQESNEETETFKKPKKRLRGKCLYDSYKASDGHFSDPSQTHSVASSDGCLSLLQKKHSGIRPHAVRKRTPRVPVSYSYGKDARQNYRQMVDSNDVAHKIALALTEASQRGGSTKVSGTPNNKSKGAMPSPGQTIGRKHAKAEMAGAKFSHSDLNEGSSELSLGSSEGDDGEYSRKFSQLSGRESSRRGKNQEKEKRCHRKKLEHEENANKHLDDVKEASSGTDKGKRLGSVKSKIDTAFASAENARSSFKGFRKTSKKVLFEQDEGSSFDALKTLADLSLMMPVTNPDTESSVRVMEDKHDVIDGSKVEAHACPRDETAALSKLAKVSSDNGVSVSPAAFQLDAGMKKRRQKSLMSKATDEGNKSVVKRKRTFLSTVLSRQLKAVKHPGKMPSSTDEKGERGNLSLSPIKISSTNEVNLANKGRYRRKMEKPKPMVEQDAKVSENFFSGQHKSVPQNSSLNHKERLIHCLSSHQIRRWCTFEWFYSAIDYPWFAKREFMEYLDHVGLGHVPRLTRIEWGVIRSSLGRPRRFSEQFLIEEKTKLNQYRDSVRKHYAELLAGTRVGPPTDMARPLIVGQRVIAIHPKTREIHNGSIQTVDNCGCRVQFDQPELGVEFVMDIDCMPLNSKLNLPDSLQRLNLIPKLNENLIGLVLNGKQQEGKIEEHRILSPGENSDNIEALYIPPSTQGINSLSKQGISLSSKSQANVSCSEIGNAQVSVSSQACYLEHAQSKKASILAVSELTRALEKKELALSELKRLNDDASESQKYGDNSLKDSEPFKRHYAAVLLQLNEVNEQVSSALFCLRQCNTYQGSSSILSLKPMANSDDPGGQASSSNCSACHNQDLKSHIAEIVDSSRTKARTMVVAAMQAMSSISKTENKVEGIEEAINFINNRLSADDLAAPAMQFMPTDSVHVTLASQDQLNSSKLNRLPNSHVEDPELKSSSDQNEVKIPSDLISHCLAMLLMIQKCTERQVPPGDVAHLLDSAVTSLQPFCSKNLPIYGEIQKCMGIIRNQILALIPT 1276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2956 1276 Gene3D - 116 233 - -
Sto10g2956 1276 MobiDBLite consensus disorder prediction 422 482 - -
Sto10g2956 1276 MobiDBLite consensus disorder prediction 361 382 - -
Sto10g2956 1276 SUPERFAMILY Homeodomain-like 176 224 IPR009057 -
Sto10g2956 1276 MobiDBLite consensus disorder prediction 1178 1202 - -
Sto10g2956 1276 MobiDBLite consensus disorder prediction 361 482 - -
Sto10g2956 1276 Pfam Myb-like DNA-binding domain 180 215 IPR001005 -
Sto10g2956 1276 SMART sant 177 225 IPR001005 -
Sto10g2956 1276 PANTHER PROTEIN ALWAYS EARLY 1-RELATED 126 1276 IPR028306 -
Sto10g2956 1276 PANTHER LIN-9 126 1276 IPR010561 GO:0006351|GO:0017053
Sto10g2956 1276 Coils Coil 1128 1148 - -
Sto10g2956 1276 Pfam DIRP 737 838 IPR033471 -
Sto10g2956 1276 MobiDBLite consensus disorder prediction 637 660 - -
Sto10g2956 1276 Coils Coil 992 1019 - -
Sto10g2956 1276 CDD SANT 180 215 IPR001005 -
Sto10g2956 1276 SMART DIRP_2 738 839 IPR033471 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2956 Sto-Chr10 39378765 39394381 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sto10g2956 DIRP 2.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2956 - - gmx:100781646 1484.54