Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2954 ATGAATTCTGCAAGGGAGGCAGGTGGTGTTGGAGGGACAGTGCCAATCCCTATGCGGTTTGTGTGGCCATATGGAGGAAGAACTGTGTATATCAGTGGTTCTTTCACAGGGTGGTCTGAACTTCTACTTATGTCGCCAGTGGAGGGTTGCCCAACTGTATTTCAAGTTATTCATAGCTTGACCCCTGGTTACCATCAGTACAAGTTTTTTGTTGATGGAGAATGGCGTCATGATGAGCATCAACCTTGTGTACTTGGAGAATATGGGACGGTCAACACTATATTCTTGGCTACCGATCCTAATGATATGCTAGTTTTAACTCCAGATGTAGCTTCTGGATCTAGTATGGAAGTGGATAATGAGGCTTTTCGGCGTGTGGTTCGGTTGACAGATGGTACATTGACTGAGGTATTGCCAAGAATCTCAGATGCTAATGTACAGACCTCTTGTCATCGCATATCTACATTCTTGTCTATGCACACAGCTTATGAACTACTTCCTGAGTCAGGCAAGGTAATTGCCGTGGATGTGGATCTTCCAGTGAAACATGCATTTCATATATTGCATGAGCAGGGAATACCTATGGCTCCTCTTTGGGACTTCTGCAAGGGGCAGTTTGTTGGCATTCTGAGTGCTGtggattttattttaattcttagaGAGCATTCACAGCTTAAGAATCACGGATCCAATCTTACAGAAGAAGAGCTTGAAACACATACGATATCTGCTTGGAAAGCAGGAAAATCATATCTGAATAGGCAGCACAATGGGCATGGTACAGCATTTCCAAGACGTTTTATCCATGCAGGGccatttgataatttaaaagaTATTGCCATGAAGATCCTGCAAAATGAGGTTTCAACAGTTCCTATTATCCATTCAACATCTGAAGATGGTTCATTTCCACAGCTTTTACATCTTGCTTCACTTTCTGGAATACTTAATTgCATTTGCAGGTACTTTAGGCATTGTTCTAGTTCCTTGCCTATGCTCCAACTACCGATTTGCGCAATTCCTGTTGGAACATGGGTGCCCAAAATCGGGGAGTCAAATCGGCAACCTTTAGCAATGTTGAGACCAACTGCTTCTCTTACTTCAGCCCTAAATTTATTAGTTCAAGCCCAAGTAAGTTCTATACCAATAGTGGATGATAATGACTCATTACTAGATATATATTGTCGAAGTGATATAACAGCTTTGGCAAAGGACAGAGCCTATACACAAATCAATTTTGATGAAATTACCGTTCATCAGGCATTGCAGTTGGGCCAGGACTCATTTTCTTATGATTTAAGAAGTCAACGATGTCAGATGTGTCTGCGATCTGATTCTCTGCATAAAGTGATGGAACGGTTGGCAAATCCAGGTGTTCGACGGCTAGTTGTCGTGGAAGCTGGTAGCAAGCGTGTGGAAGGCATTATTTCTCTGACTGACATATTCAAGTTCTTCCTTGGTTAG 1464 0.4153 MNSAREAGGVGGTVPIPMRFVWPYGGRTVYISGSFTGWSELLLMSPVEGCPTVFQVIHSLTPGYHQYKFFVDGEWRHDEHQPCVLGEYGTVNTIFLATDPNDMLVLTPDVASGSSMEVDNEAFRRVVRLTDGTLTEVLPRISDANVQTSCHRISTFLSMHTAYELLPESGKVIAVDVDLPVKHAFHILHEQGIPMAPLWDFCKGQFVGILSAVDFILILREHSQLKNHGSNLTEEELETHTISAWKAGKSYLNRQHNGHGTAFPRRFIHAGPFDNLKDIAMKILQNEVSTVPIIHSTSEDGSFPQLLHLASLSGILNCICRYFRHCSSSLPMLQLPICAIPVGTWVPKIGESNRQPLAMLRPTASLTSALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDRAYTQINFDEITVHQALQLGQDSFSYDLRSQRCQMCLRSDSLHKVMERLANPGVRRLVVVEAGSKRVEGIISLTDIFKFFLG 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2954 487 SUPERFAMILY CBS-domain pair 150 325 IPR046342 -
Sto10g2954 487 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 14 487 - -
Sto10g2954 487 ProSiteProfiles CBS domain profile. 165 225 IPR000644 -
Sto10g2954 487 Pfam Glycogen recognition site of AMP-activated protein kinase 16 96 IPR032640 -
Sto10g2954 487 ProSiteProfiles CBS domain profile. 352 409 IPR000644 -
Sto10g2954 487 SUPERFAMILY CBS-domain pair 354 486 IPR046342 -
Sto10g2954 487 PANTHER CBS DOMAIN, IMMUNOGLOBULIN E-SET-RELATED 14 487 - -
Sto10g2954 487 SMART cbs_1 356 404 IPR000644 -
Sto10g2954 487 SMART cbs_1 437 486 IPR000644 -
Sto10g2954 487 SMART cbs_1 171 220 IPR000644 -
Sto10g2954 487 Gene3D - 142 328 IPR046342 -
Sto10g2954 487 Pfam CBS domain 355 400 IPR000644 -
Sto10g2954 487 Pfam CBS domain 439 486 IPR000644 -
Sto10g2954 487 Gene3D - 343 487 IPR046342 -
Sto10g2954 487 ProSiteProfiles CBS domain profile. 433 487 IPR000644 -
Sto10g2954 487 Gene3D Immunoglobulins 16 106 IPR013783 -
Sto10g2954 487 SUPERFAMILY E set domains 16 97 IPR014756 -
Sto10g2954 487 CDD E_set_AMPKbeta_like_N 17 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2954 Sto-Chr10 39365654 39373754 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2954 12 99 Protein tyrosine phosphatase (PTP) family AT3G01510 33.333 6.27e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2954 - - gmx:100785692 845.499