Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2935 ATGGGTCATCAAGTGAAAGGCAAGTCTCCTGCTGTTGCGCATACAACTGCTCAGAAATTGAAGAAGGACCATACAGCGAAGAAAGAAGAGGATCAATTCCAGCGTGGGAGTGTGTGGGACCATGCAACTATGAGTAATGAATTCTCATCTTCTCGACGTGATGCCTTCCCGGCCGGTCTCCGAGTTCTCGTCGTCGACGACGATTTAACGTGGCTCAGGATTCTTGAGAAGATGCTCAAGAAGTGTTCTTACGAagTGACTACATGTTGTTTAGCAAAAGAGGCTCTAAACTTGCTTCGTGAAAGGAAAGATGGATTTGATATTGTGATCAGTGATGTAAACATGCCTGACATGGATGTGATGTCTGTTGATGGAGAAACGAGGAGGGTGATGAAAGGCGTTCAGCATGGAGCATGTGATTATCTCCTTAAGCCTATAAGGATGAAAGAACTACGTAATATATGGCAACATGTCTTTAGGAAAAGGATGCACGAGGCAAGAGAATTTGGAACTGTCGAGGGTTTTGATAGCATTCTCTTAACAAGGAATGTATCAGATCACTTTGATGATGGGAACTTTTTTGCTATAGAAGATATGACCtcaacaaagaaaagaaaagatccAGATAGCAAACATGATGACAAAGAATTTGGAGATCAATCTTCCACAAAGAAAGCCAGAGTAGTTTGGTCTGTAGATCTTCATCAGAAATTTGTTAAGGCTGTGAATCAGATTGGATTTGATAAAGTTGGTCCCAAGAAAATTCTTGATTTGATGAATGTTCCATGGTTGACTCGGGATAATGTTGCTAGCCATTTGCAGAAATACAGGCTCTACTTGGGTAGGTTACAGAAGGATGGTGATCAGAGTCCTTCCTCAAGTGTTATTCAGCATTCACTTTTTCCTTCAAAAGATCCATCAGGCAGTTTCAGTTTTCAGAACCCAGCAATCAGGCAACAAAATGATGCTTCAGTTGATAGTTGCAGGTATTCAAGTGGAACATTACAACTTAAGAATGTGGATGCTAGAGGTCATGAAGGTGATAATATCAAGAGAATCGCTTCAGAGGCTATGATAGATAAAAGAACAGATATGACTGGTAAGACACATGATACAAAGATAAGGAAGAGTTCACAGAAGGGCCCTAATCAGTCTTTTGCACCTCCAGATTCAGAAAGAAACCATGCAACTTTTGATTGCACTACCCCAAAATGGAGTGAACTTCCAGAAATGCATCTCAATAAACATGACTCACGTATTCCATTAAAGGATAGCTTCAGCCAGTTGCCATTACATAATACCCATCACAACATACAGGTTGATCAGTCACAAACAAATACTTCAGTTAGTTCCAACCTCTCTGTAATAGAGGGAGAAACTGCTGCCTGCATTGAAACTAGGCCTTTATATGCAGATCACAAGAATGCCGGTTCTGTGAGTTCAATAGGGAGTGCAGACACCTTTTCTATGCAGTCCAGGAGCTCTATGTTGAATGATCAATCTTTAgaacccatttccacttccatgAAAAATCAGGGCCTTAATCTTACTTGCAACTCTGACCTGGATTTATTCCCAAAAAACCTACTTTTGGGAGGTGAGGTAGCTTCTGCACCTTTGGAGGACTTGAAATCCTTTTGGCCACTAGGTGAAGGCTATAATGTGAACTCTGGACTGCAGAATATAGAGATGCCAGAGTATTATGATTTAGGCCTCATTGGGGAAGTTCCAACTTATGATACAGCAGATTAG 1752 0.4007 MGHQVKGKSPAVAHTTAQKLKKDHTAKKEEDQFQRGSVWDHATMSNEFSSSRRDAFPAGLRVLVVDDDLTWLRILEKMLKKCSYEVTTCCLAKEALNLLRERKDGFDIVISDVNMPDMDVMSVDGETRRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRMHEAREFGTVEGFDSILLTRNVSDHFDDGNFFAIEDMTSTKKRKDPDSKHDDKEFGDQSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRDNVASHLQKYRLYLGRLQKDGDQSPSSSVIQHSLFPSKDPSGSFSFQNPAIRQQNDASVDSCRYSSGTLQLKNVDARGHEGDNIKRIASEAMIDKRTDMTGKTHDTKIRKSSQKGPNQSFAPPDSERNHATFDCTTPKWSELPEMHLNKHDSRIPLKDSFSQLPLHNTHHNIQVDQSQTNTSVSSNLSVIEGETAACIETRPLYADHKNAGSVSSIGSADTFSMQSRSSMLNDQSLEPISTSMKNQGLNLTCNSDLDLFPKNLLLGGEVASAPLEDLKSFWPLGEGYNVNSGLQNIEMPEYYDLGLIGEVPTYDTAD 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2935 583 SUPERFAMILY Homeodomain-like 223 281 IPR009057 -
Sto10g2935 583 PANTHER TWO-COMPONENT RESPONSE REGULATOR 35 565 - -
Sto10g2935 583 Gene3D - 221 284 - -
Sto10g2935 583 MobiDBLite consensus disorder prediction 1 33 - -
Sto10g2935 583 PANTHER TWO-COMPONENT RESPONSE REGULATOR 35 565 IPR045279 GO:0009736
Sto10g2935 583 Gene3D - 38 124 - -
Sto10g2935 583 SMART REC_2 60 155 IPR001789 GO:0000160
Sto10g2935 583 ProSiteProfiles Response regulatory domain profile. 61 159 IPR001789 GO:0000160
Sto10g2935 583 CDD REC_typeB_ARR-like 62 159 - -
Sto10g2935 583 MobiDBLite consensus disorder prediction 364 402 - -
Sto10g2935 583 Pfam Response regulator receiver domain 62 119 IPR001789 GO:0000160
Sto10g2935 583 MobiDBLite consensus disorder prediction 378 401 - -
Sto10g2935 583 Pfam Myb-like DNA-binding domain 227 277 IPR001005 -
Sto10g2935 583 SUPERFAMILY CheY-like 59 167 IPR011006 -
Sto10g2935 583 MobiDBLite consensus disorder prediction 17 33 - -
Sto10g2935 583 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 225 278 IPR006447 GO:0003677
Sto10g2935 583 Gene3D - 125 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2935 Sto-Chr10 39209073 39219444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2935 54 289 Response Regulator Gene Family AT2G25180 50.000 5.08e-66 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Sto10g2935 Response_reg 9e-10 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2935 - K14491 gmx:100778324 668.307