Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2908 ATGATGGATGTTGCAGAGgtagaagaaaatatttttgtagcAAGTGATGCCAAGTTACATGGAGAATTGTGCAAGACTCTTTCTGCAACATATTACAAAGTATTGTCAATATTTCCGTCTTTGGAAGCAGCTAGACCTAGGAGCAAATCTGGAATTCAGGCATTATGTTCTTTGCATGTGGCATTAGAGAAGGCCAAGAATGTTCTTCAGCATTGCTCAGAATGTAGTAAGCTTTATTTGGCTATAACTGGGGATTCTGTTCTTCTAAAATTTGAGAAGGCTAAATGTGCTCTTGAAGATAGTCTTAAAAGGGTGGAAGATATTGTTCCCCAATCTATTGGGTGTCAGATTCGGGAGATTGTGAATGAACTCGAAAGTATGGAATTTGCTCTTGATCCATTGGAGAAGCAAATTGGTGATGACTTAATTGCTTTGCTCCAGCAGGGGAGAAAGTTTAATAACTCTAATGACAGTAGTGAGCTTGAATGCTTTCACCAGGCTGCTACTAGACTTGGAATCACTTCTTCAAGAGCAGCACTTACTGAAAGAAGAGCTCTCAAGAAACATATAGATAGAGCTCGGGCTGAGGAAGATAAGCGGAAGGAATCAATTGTTGCATATCTCTTACACCTTATGAGGAAATACTCCAAGTTATTTAGAAGTGAGTTTTCAGATGACAATGATTCTCAGGGTTCTGCTCCATGTTCTCCCACTGTTCAAGGTTCTGTTGAGGATAGTGTTGCTGGTGGTCATTACCAAGCCTTTGACAGACAGCTTTCAAAACTgagttcttttaattttaagccaatTAATAGGAAATTAGAGCAAATTCCCCTTCCACCTGAAGAGTTAAGGTGTCCAATATCTCTGCAACTTATGTATGATCCTGTAATAATTGCTTCTGGGCAAACATATGAGAGGGTTTGCATAGAGAAATGGTTCTGTGATGGGCACAACACCTGCCCGAAGACGCAACAGAAACTTGCACATCTTTCGTTGACTCCTAATTACTGTGTTAAGGGTCTTGTTGCTTGTTGGTGTGAACAAAATGGAGTTCCTATTCCTGATGGTCCCCCAGAATCTCTTGACCTTAACTACTGGAGATTAGCATTATCTGAGTCTGAATCAACAAATTCAAGATCTGTAGGCAGTGTCAACTCGTGCAAATTGAAGGGTGTCAAAGTGGTTCCTATAGAAGAGAGTGGTGTCTCACAGGAAACTGGAGAAAATGGAGCTGAAAGTGTGTCTGCACAAGAGGAAGATATTGAACAGTATCTTAGTTTTCTGAAAGTCTTGACTGATGGGAACAATTGGAAGAGGAAATGTAAAGTGGTTGAGCGGTTAAGGCTGTTATTGAGGGATGATGAAGAAGCCCGAATTTTTATGGGAGACAATGGGTTTGTTGAAGCACTTTTGCAGTTTCTGCAATCAGCAGTTTGTGAAGGAAACGTGAAAGCTCAAGAAAGTGGAGCAATGGCTCTCTTTAACCTTGCTGTGAATAACAACAAAAATAAGGAAACTATGTTAGCAGCTGGAGTATTATCATTGCTGGAGGAAATGATTTCCAATTGCAGTTCTTATGGTTGTGCCACGGCCCTTTATCTAAATCTCTCTTGCCTTGAAGAAGCCAAGCCTATGATTGGCATGAGTCAGGCTGTTCAGTTCCTCATCCAGCTCCTCCTTCAACCAGACGTTGATGATCAGTGCAAGCAAGATTCCCTGCATGCACTCTATAATCTGTCTACTGGGCCCTCCAATATTCCGAACCTCCTTTTGTCCGGCATCATTACTGGGCTTCAATCCCTTCTTGCAGGTCAAGGTGATTGCATGTGGACAGAAAAATGCATAGCTGTTCTGATCAATTTGGCTGCTTCTCAGCTGGGAAAGGAGGAAATGATATCATCTCCAGGACTCATAAGCGCTTTGGCTACGGTATTGGACACGGGTGAGCTTGTAGAGCAGGAGCAAGCTGTCTCTTGTCTCTTGATTCTatgtaatgggaatgaaatATGTAGCCAGATGGTCCTGCAAGAAGGGGTTATACCTGCATTGGTGTCATTATCAGTGAATGGGACctcaagaggaagagaAGAGCAACGACAGCGAGACCATTCACCTCCGAAAATACAACAGTTTGAGCCTGAAACTACTAGTGATGATATGTCCATTCCTCCTCCGCCCCCTCCGGAAACGAAACCGCTATGTAAGTCAATGTCTAGGAAAAAAATGGGGAGAGCTCTTAGCTTTTTATGGAAAAACAAGAGCTATTCCGTTTACCAGTGTTAA 2286 0.4094 MMDVAEVEENIFVASDAKLHGELCKTLSATYYKVLSIFPSLEAARPRSKSGIQALCSLHVALEKAKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALEDSLKRVEDIVPQSIGCQIREIVNELESMEFALDPLEKQIGDDLIALLQQGRKFNNSNDSSELECFHQAATRLGITSSRAALTERRALKKHIDRARAEEDKRKESIVAYLLHLMRKYSKLFRSEFSDDNDSQGSAPCSPTVQGSVEDSVAGGHYQAFDRQLSKLSSFNFKPINRKLEQIPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFCDGHNTCPKTQQKLAHLSLTPNYCVKGLVACWCEQNGVPIPDGPPESLDLNYWRLALSESESTNSRSVGSVNSCKLKGVKVVPIEESGVSQETGENGAESVSAQEEDIEQYLSFLKVLTDGNNWKRKCKVVERLRLLLRDDEEARIFMGDNGFVEALLQFLQSAVCEGNVKAQESGAMALFNLAVNNNKNKETMLAAGVLSLLEEMISNCSSYGCATALYLNLSCLEEAKPMIGMSQAVQFLIQLLLQPDVDDQCKQDSLHALYNLSTGPSNIPNLLLSGIITGLQSLLAGQGDCMWTEKCIAVLINLAASQLGKEEMISSPGLISALATVLDTGELVEQEQAVSCLLILCNGNEICSQMVLQEGVIPALVSLSVNGTSRGREEQRQRDHSPPKIQQFEPETTSDDMSIPPPPPPETKPLCKSMSRKKMGRALSFLWKNKSYSVYQC 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2908 761 SMART arm_5 455 499 IPR000225 GO:0005515
Sto10g2908 761 SMART arm_5 625 666 IPR000225 GO:0005515
Sto10g2908 761 SMART arm_5 501 539 IPR000225 GO:0005515
Sto10g2908 761 SMART arm_5 540 582 IPR000225 GO:0005515
Sto10g2908 761 Gene3D - 426 608 IPR011989 -
Sto10g2908 761 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 353 IPR013083 -
Sto10g2908 761 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 727 - -
Sto10g2908 761 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Sto10g2908 761 SUPERFAMILY RING/U-box 280 356 - -
Sto10g2908 761 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 551 595 IPR000225 GO:0005515
Sto10g2908 761 SUPERFAMILY ARM repeat 422 692 IPR016024 -
Sto10g2908 761 CDD RING-Ubox_PUB 284 326 IPR045210 -
Sto10g2908 761 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Sto10g2908 761 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 466 512 IPR000225 GO:0005515
Sto10g2908 761 Gene3D - 609 705 IPR011989 -
Sto10g2908 761 PANTHER U BOX DOMAIN-CONTAINING 2 727 - -
Sto10g2908 761 MobiDBLite consensus disorder prediction 695 709 - -
Sto10g2908 761 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Sto10g2908 761 MobiDBLite consensus disorder prediction 692 739 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2908 Sto-Chr10 39009465 39013095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2908 2 760 U-box Gene Family AT1G24330 67.394 0.0 1031
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2908 - - gmx:100794099 1204.12