Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2904 ATGGTGAAGTACTCCAGGGAGCCTGATAATCCTACAAAGTCGTGCAAGGCTAGAGGATCTGACCTCAGAGTGCACTTCAAGAATACTAGGGAGACTGCCTTTGCCATCAGGAAGTTGCCTTTGGCTAAGGCTAAGAGGTACTTGGAGGATGTCTTGGCCCACAAACAGGCCATTCCATTCCGACGCTTCTGTGGTGGAGTTGGGAGAACAGCCCAGGCAAAGAACAGACATTCTAATGGTCAAGGGCGCTGGCCTGTCAAGTCAGCTAAATTCATTTTAGACTTGCTCAAGAATGCTGAGAGTAATGCAGAAGTGAAAGGTTTGGATGTGGATGCCCTCTTCATTTCCCATATCCAGGTTAATCAAGCTCAGAAGCAAAGACGTCGCACCTACCGAGCTCACGGAAGGATCAATCCTTACATGTCTTCTCCGTGCCACATTGAGCTGATATTATCCGAGAAGGAAGAGCCTGTCAAGAAGGAGATGGATTGGCAAGGGCAAAAGCTAGCAGAGCAGCTGATGCAGATAATGCTTCTGGCATTTGCTGTGGTTGCATTTGCTGCAGGATACATAATGGCTTCTTTCCAAATGATGATCCTCATATACGCTGGTGGCGTGGTTCTCACTACATTGGTGACTGTTCCAAATTGGCCCCTTTTCAATCGCCATCCTCTGAAGTGGTTGGATCCAAGTGAGGTTGAAAAGCACCCAAAGCCCCAGCAATCTGTGAATGTAAACTCAAAGAAGAAGCCTGCCAAGAAGTAG 765 0.4771 MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALFISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEMDWQGQKLAEQLMQIMLLAFAVVAFAAGYIMASFQMMILIYAGGVVLTTLVTVPNWPLFNRHPLKWLDPSEVEKHPKPQQSVNVNSKKKPAKK 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2904 254 Pfam Microsomal signal peptidase 12 kDa subunit (SPC12) 162 231 IPR009542 GO:0005787|GO:0006465|GO:0016021
Sto10g2904 254 PANTHER 60S RIBOSOMAL PROTEIN L17 1 165 IPR005721 GO:0003735|GO:0006412|GO:0015934
Sto10g2904 254 TIGRFAM uL22_arch_euk: ribosomal protein uL22 4 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Sto10g2904 254 Hamap 50S ribosomal protein L22 [rplV]. 2 154 IPR005721 GO:0003735|GO:0006412|GO:0015934
Sto10g2904 254 SUPERFAMILY Ribosomal protein L22 1 154 IPR036394 GO:0003735|GO:0005840|GO:0006412
Sto10g2904 254 MobiDBLite consensus disorder prediction 231 254 - -
Sto10g2904 254 CDD Ribosomal_L22 15 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
Sto10g2904 254 Pfam Ribosomal protein L22p/L17e 17 152 IPR001063 GO:0003735|GO:0005840|GO:0006412
Sto10g2904 254 ProSitePatterns Ribosomal protein L22 signature. 127 151 IPR018260 GO:0003735|GO:0005840|GO:0006412
Sto10g2904 254 PANTHER 60S RIBOSOMAL PROTEIN L17-1 ISOFORM X1 1 165 - -
Sto10g2904 254 Gene3D Ribosomal protein L22/L17 1 174 IPR036394 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2904 Sto-Chr10 38964008 38972366 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2904 1 165 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 90.303 7.54e-111 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2904 K02880 - cpap:110825807 328.946