Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2884 ATGGCAACTCAGATGAGCAAAAAGCGAAAGTTCGTCGCCGATGGAGTTTTCTTCGCCGAGCTGAATGAGGTTTTGACCCGAGAGCTTGCTGAGGATGGATACTCTGGTGTTGAGGTTAGAGTAACTCCAATGCGTACTGAGATCATTATCAGAGCCACTCGAACCCAGAATGTACTTGGTGCGAATTCCATTATGTCATTATCGaGTGAGAAGGGAAGGAGGATTAGGGAGCTGACCTCGGTGGTGCAGAAGAGATTTAAGTTTCCAGAGAACAGTGTGGAGCTATATGCTGAGAAGGTCAACAATAGGGGTCTTTGTGCTATTGCCCAGGCTGAGTCTCTTCGCTACAAGCTTCTTGGTGGTCTCGCTGTTAGGAGGGCTTGCTATGGTGTTTTAAGATTTGTTATGGAAAGTGGTGCAAAGGGATGTGAGGTTATCGTCAGTGGAAAATTGAGGGCTCAGCGAGCCAAATCCATGAAGTTCAAGGATGGGTACATGATCTCTTCTGGTCAGCCAGTCAAAGATTACATCGATTCTGCCGTAAGACATGTACTCCTCAGACAGGGGGTTCTTGGTATTAAGGTCAAGATCATGCTTGATTGGGATCCTAAAGGAAAGCAGGGTCCTAAAACTCCACTTCCTGATATTGTTACAATCCACCCTccaaaggaagaggaagaatacATCCGTCCCGCCGCCCCGATCGTTCCAACAACCGATATCGACGTTCCTGTGTCTCCTGTGGCTGTGGCTTAA 756 0.463 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGANSIMSLSSEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHPPKEEEEYIRPAAPIVPTTDIDVPVSPVAVA 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2884 251 ProSitePatterns Ribosomal protein S3 signature. 156 192 IPR018280 -
Sto10g2884 251 Pfam KH domain 20 102 IPR004044 GO:0003723
Sto10g2884 251 Pfam Ribosomal protein S3, C-terminal domain 115 197 IPR001351 GO:0003735|GO:0006412
Sto10g2884 251 CDD 40S_S3_KH 15 104 - -
Sto10g2884 251 Gene3D - 102 228 IPR036419 -
Sto10g2884 251 SUPERFAMILY Ribosomal protein S3 C-terminal domain 102 200 IPR036419 -
Sto10g2884 251 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 108 IPR009019 GO:0003723
Sto10g2884 251 TIGRFAM uS3_euk_arch: ribosomal protein uS3 8 219 IPR005703 GO:0003735|GO:0006412|GO:0015935
Sto10g2884 251 PANTHER 40S RIBOSOMAL PROTEIN S3-RELATED 3 237 - -
Sto10g2884 251 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 3 237 - -
Sto10g2884 251 Gene3D - 1 101 IPR015946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2884 Sto-Chr10 38815970 38818517 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2884 1 249 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 82.101 8.31e-153 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2884 K02985 - zju:107424066 441.81