Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2878 ATGTCGGTGAATCTCACGCCGAACGCGATCGCGGCGATACTCGCCGGCGACGTTAACTCGAAGCCGCTCGTCCAGGTCCTGGACATCAAGTTGATTTCCAACAAGTCACAGCAGGAGAGGTACCGGCTTCTCATTTCCGATTCCGCCTCCACTCAGCACGCTATGCTCGCCACTCAGCTGATCGAGTACATTTGCAGTCCTATTCAGAACCGCAAGATTATTGTAGTGCTCAACATGGAAACAATAATACCAGATTGTGAGATTATTGGGAACCCGACCTCATTTGCGGAATCTGATTTAACTTCTCAGAAAACATTGCCTAATAACAACACGCAGAACTCGTCCATGCTTAATAGTAATCGTTTGGCTGCCCAAAATTCAAGTCATGAAGCCCAGAATTTCAGGCCAACTGTTCAACCTCCATTCCGACCACCTCCAGTTTACAAAGGCCATGGTGCAATTGTGAAGAATGAGGCACCAGCACGCATCATTCCCATTGCTGCTCTAAATCCTTATCAAGGTCGGTGGGCTATCAAGGCAAGAGTAACTGCAAAAGGAGATCTTCGCCGCTATAATAATGCTCGTGGCGATGGTAAAGTCTTCTCTTTTGACCTCCTAGATTCTGATGGAGGCGAAATACGAGTAACTTGCTTCAATGCTGTTGTTGATCGCTTTTATGATGTGATTGAGGTTGGGAAAGTTTACTTGATATCCAAAGGTAGCTTAAAACCTGCCCAGAAGAACTTCAATCATCTGAAGAATGACTGGGAAATTATGTTGGACTCAAATTCAACTGTGGATCTTTGCCCAGATGAAGATGGTTCTATACCTAGACAGCAGTTCTCCTTTAGGCCTATCAGTGATGTTGAAAACGTTGATAGTAACTCCATACTAGATGTTATTGGGGTTGTGACATCTGTGAATCCCTCAGTTCCCATCTTGAGGAAGAATGGAATGGAAACTCAGAGACGGATTCTGAATTTAAAGGATTGGTCTGGCAGGAGTGTTGAGCTAACCCTTTGGGGTGATTTCTGCAATAGGGAAGGTCAAAAGCTGCAAGATATGGTTAATGATGGGTTTTTCCCTGTTCTGGCAGTCAAAGCTGGGAAGGTTAACGACTTCAGTGGAAAAACTATAGGAACCATTTCTTCTACTCAACTCTTCATTAACCCAGATTTTCCTGAGGCTCAAAAATTAAGAGACTGGTTTGATCAAGGAGGAAAAGATTCTGCTTCTCTGTCCATTTCTAAGGACATTATGCCTGGAGGACCTAAGAATGAGATACGCAAAACTGTGTCTCAGATCAAGGAAGAAGGCTTGGGACGATCAGATAAGCCAGACTGGATAACAGTGAGGGCAACCATATCTTTCATCAAGACTGATTCCTTTTGTTACACAGCCTGCCCACTGATGATTGGAGATCGGCAATGCAGTAAAAAAGTGACTAGGTTAGGAAGCACGAAATGGCAATGCGATAGATGCAATCAGGAGTTTGAGGAGTGTGACTATCGGTACCTTCTTCAAGCGCAAATTCTGGATCACACAGGAATAACTTGGGTAACTGCATTCCAAGAATCAGGGGAAGAAATTCTGGGTTGTTCAGCAAAGGAGCTGTACTTATTGAAGGAGCAGGATGATGAAAAGTTTGGTGACATAATCCGGAGTAGGCTCTTCAACCAGTTTATGTTTCGTCTAAAAGTAAAGGAGGAATTGTATGGCGATGAACAGAGGGTGAAGATTACAGTAGTTAAAACAGAAAAGGTGAATTATTCTTCTGAGAGTAGATACCTGCTtgatttaatctcaaaatttCATCGGCAGTAG 1824 0.4342 MSVNLTPNAIAAILAGDVNSKPLVQVLDIKLISNKSQQERYRLLISDSASTQHAMLATQLIEYICSPIQNRKIIVVLNMETIIPDCEIIGNPTSFAESDLTSQKTLPNNNTQNSSMLNSNRLAAQNSSHEAQNFRPTVQPPFRPPPVYKGHGAIVKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYDVIEVGKVYLISKGSLKPAQKNFNHLKNDWEIMLDSNSTVDLCPDEDGSIPRQQFSFRPISDVENVDSNSILDVIGVVTSVNPSVPILRKNGMETQRRILNLKDWSGRSVELTLWGDFCNREGQKLQDMVNDGFFPVLAVKAGKVNDFSGKTIGTISSTQLFINPDFPEAQKLRDWFDQGGKDSASLSISKDIMPGGPKNEIRKTVSQIKEEGLGRSDKPDWITVRATISFIKTDSFCYTACPLMIGDRQCSKKVTRLGSTKWQCDRCNQEFEECDYRYLLQAQILDHTGITWVTAFQESGEEILGCSAKELYLLKEQDDEKFGDIIRSRLFNQFMFRLKVKEELYGDEQRVKITVVKTEKVNYSSESRYLLDLISKFHRQ 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2878 607 MobiDBLite consensus disorder prediction 121 135 - -
Sto10g2878 607 Pfam Replication factor-A protein 1, N-terminal domain 5 77 IPR007199 GO:0003677|GO:0005634|GO:0006260
Sto10g2878 607 SUPERFAMILY Nucleic acid-binding proteins 280 408 IPR012340 -
Sto10g2878 607 Gene3D - 416 605 IPR012340 -
Sto10g2878 607 SUPERFAMILY Nucleic acid-binding proteins 429 604 IPR012340 -
Sto10g2878 607 Pfam OB-fold nucleic acid binding domain 177 249 IPR004365 GO:0003676
Sto10g2878 607 Pfam Replication protein A OB domain 286 390 IPR031657 -
Sto10g2878 607 SUPERFAMILY Nucleic acid-binding proteins 162 275 IPR012340 -
Sto10g2878 607 CDD RPA1_DBD_A 165 268 - -
Sto10g2878 607 SUPERFAMILY Nucleic acid-binding proteins 1 91 IPR012340 -
Sto10g2878 607 MobiDBLite consensus disorder prediction 121 141 - -
Sto10g2878 607 Gene3D - 275 414 IPR012340 -
Sto10g2878 607 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A 2 601 - -
Sto10g2878 607 CDD RPA1_DBD_C 432 603 IPR013955 -
Sto10g2878 607 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 4 603 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sto10g2878 607 CDD RPA1_DBD_B 297 404 - -
Sto10g2878 607 Pfam Replication factor-A C terminal domain 448 597 IPR013955 -
Sto10g2878 607 PANTHER REPLICATION FACTOR A 1, RFA1 2 601 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sto10g2878 607 Gene3D - 3 96 IPR012340 -
Sto10g2878 607 Gene3D - 162 272 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2878 Sto-Chr10 38801537 38804005 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2878 26 603 Core DNA Replication Machinery Family AT2G06510 69.756 0.0 886
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2878 K07466 - zju:107409151 1004.59