Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2843 aTGGGAAGAGCACCATGCTGTGAGAAAGTGGGGTTGAAGAAAGGAAGATGGACTGCTGAAGAAGATCGCATACTCACACAATACATCCAACAACATGGTGAAGGCTCTTGGAGGTCCTTGCCCAAGAATGCcgGATTGTCAAGGTGTGGGAAGAGTTGTAGACTGAGATGGATAAACTATCTAAGGGCAGATGTGAAGAGAGGAAACATCACTCCTCAAGAGGAAGAGATCATTGTTAAGTTGCATGCTGCTCTTGGTAATAGGTGGTCTGTAATAGCAGGGCAATTACCAGGAAGAACAGATAATGAGATAAAGAATTACTGGAACTCTCATCTAAGGCGAAAAATCTACTGCTTCATGAAATCCTTAAACGATTCTCTTCCCTCCGCTCACATCGCTTCAGTTCTCAATCACATcccttcttctgcttcttccaAACGCAGGGCTGCTGGTGGTCGACGCTCACCaactcaaccaccacccatcaAACAGAACAACTCCATTCCTTCCGCCGCACGCAAGGTGTTCGACAAAATGTCTCAACCAAAACCAACCTCACAAGCTATTGAACATGTTGGTCTTGTTGTGGGATCTGCTTCTTCTTGGAGCTTAACTCACCAAGATGAGGCCACAGAAGCTACATTGTGCCCACCAGGTATTGATACTGAAGCTGGAGGCAGAGTTGAGAGTAGCTTGGGACCATATCAATGGCTAGATGATGAAATAATGAAGCTTAGTTACATGTTGGAAAGTGGGGTGTTTGTGAACCCAAGTGAGGATAATATTGTGGCACTTGATCAGGTGGatgatatgatgatgatgagcagAAATGATGGGATTGTGGGAGGAGATTTATATGAATTGGTGGGGAAGGAGATAATGGGAATTACCACAAATAATGCAGAATTAAGTGGGTGTAATTCATCAGAGAACTCTGTTTATGATTATCAATGGCTTGATTTTGATTGGGATGTGGGAGGCGGTGTCCATCAAGTTCAACCTTATGATAATAATCAATGGGGtttttgtgaagaagatgaagaagatcaGAAAATGACTTGTTTGTGGGGTAATAATGGCAATGGTGAAGAATTTGGAGAAGATGCTGTTGAAGTGATTCATTTTAATGAAGTCAATAATGTTTCAGAATTGGTTTTACAGTGGAAAACTAAAATAGGTTCAAAAACAgcaattcaaaatttgttacATACCTGTGACTTGTGTTTTGATGTCAATGCGGGAAAACCAGTGAAGGTGTCAGAATCATGTCTACCACATAACTTATCTTTGAATAGCACTTCTTGTTCTTTCTTCTCCTGTAATCTTGGGACAAGCTCTGCTAAATTAAGGGAGGACATTAGATCTTTTGTGTTTGATGCAATACAGGAAGATAACTTTACTTTAAAAGAATCCTCACCAGAAGTCTCAACTCCATGCGTTAGTTCCCTCAATTTCTGCTCCAAAAGAATACCTAAAGCATCCCCACCTATCACATTGTATCTTACTGGAGATTTTGGGTTGTCTGAGTCCAGCAAGACTCTTTTAATGCGGTGA 1554 0.3867 MGRAPCCEKVGLKKGRWTAEEDRILTQYIQQHGEGSWRSLPKNAGLSRCGKSCRLRWINYLRADVKRGNITPQEEEIIVKLHAALGNRWSVIAGQLPGRTDNEIKNYWNSHLRRKIYCFMKSLNDSLPSAHIASVLNHIPSSASSKRRAAGGRRSPTQPPPIKQNNSIPSAARKVFDKMSQPKPTSQAIEHVGLVVGSASSWSLTHQDEATEATLCPPGIDTEAGGRVESSLGPYQWLDDEIMKLSYMLESGVFVNPSEDNIVALDQVDDMMMMSRNDGIVGGDLYELVGKEIMGITTNNAELSGCNSSENSVYDYQWLDFDWDVGGGVHQVQPYDNNQWGFCEEDEEDQKMTCLWGNNGNGEEFGEDAVEVIHFNEVNNVSELVLQWKTKIGSKTAIQNLLHTCDLCFDVNAGKPVKVSESCLPHNLSLNSTSCSFFSCNLGTSSAKLREDIRSFVFDAIQEDNFTLKESSPEVSTPCVSSLNFCSKRIPKASPPITLYLTGDFGLSESSKTLLMR 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2843 517 PANTHER MYB TRANSCRIPTION FACTOR 2 277 - -
Sto10g2843 517 CDD SANT 16 61 IPR001005 -
Sto10g2843 517 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Sto10g2843 517 Gene3D - 71 116 - -
Sto10g2843 517 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Sto10g2843 517 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Sto10g2843 517 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Sto10g2843 517 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Sto10g2843 517 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Sto10g2843 517 MobiDBLite consensus disorder prediction 143 169 - -
Sto10g2843 517 Gene3D - 13 66 - -
Sto10g2843 517 CDD SANT 71 112 IPR001005 -
Sto10g2843 517 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Sto10g2843 517 SMART sant 13 63 IPR001005 -
Sto10g2843 517 SMART sant 66 114 IPR001005 -
Sto10g2843 517 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 2 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2843 Sto-Chr10 38457192 38462402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2843 1 159 MYB Transcription Factor Family AT2G47460 68.125 7.76e-72 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto10g2843 Myb_DNA-binding 2.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2843 K09422 - gmx:100819736 329.331