Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2841 atggcaGTGACACATGCTGATCTTGAACCAAGCCCAACAAGAAGAAATCTCATCACAAGCAAAACTGGTGTGTTCCTTATGCTCTTCACTATCCTTCTCGGcatttcttccttccttctctgTCTCGTGGCTGAAGCTTCGTGCACGGCGGAATTATGTGTATATAGTGGGAGTGTAAAGAAAGCTTTGATATGCGGCGGAAGTGCGTCTGTTGCATTAGCAATAGCAATTATAACGGAGCAATTTTTTAGATTTGTGCCGGTTGCTCAAACGTCGCCCGAGTTACTTTCCCCTGAAACCCATTCTCCTTCTGCTTCTACTAACTCTCTCCCTGGCCAATTTGGCTTCTTCCTCTTCACAACTTGGATGTGTTTCACAGCAGGGGAGACTTTGTTATTTGGAGCTATGATCGCAGAATCAGGACATGTCACAACGTGGTCAAAACCAAGAGCAAGATGCCCTGCAGTACGAGAAGGTGTGTACTTAGCAGCAGGAGTGTTTGGACTGAGCACAATCGAATGTGATTTTGAGGTTGTTGTGGAGTTAGTTGAAAACAGTACTGTTGTCAACCATCCGTACTCAGGTTTGGTGCAACGAATAAGGGATTTGATGAAACATAATTGGGACGTAATTTTGGTACATGCTTTCCGTGAAGCAAATCGGACAGTTGACTTCATGGCAAAGCTGAGCTATCTTCCACCTAGTTCTTTAGATATGGTCGATTCGAGTGGGAAGGGATCGGAGTCCGACGACGTCATCAATCACGCAAACCCTACCAGTGATTCATCGGAAGAGAGTCCAATGATGAGCAGCGAGCTCAAGAAAACCTGCGCCGATTGCGGCACTTCCAAAACGCCTCTCTGGAGAGGTGGTCCCGCTGGGCCCAAGTCTCTGTGCAACGCGTGTGGGATCAGAagcaggaagaagaagagggcgATTCTGGGAATGAACAAGGGGAGCACGGAggagaaaaagggaaagaagagcaATGGTAATAACAGTAAGATTGGGGATAGTTTGAAGCAGAGATTGATGGAATTGGGAAGAGAGGTTCTGATGCAGAAATCAACGGTGGAGaggcagaggaagaagaagctgGGAGAGGAAGAACAAGCGGCCGTACTGTTGATGGCTCTCTCATATGGCTCCGTCTATGCTTGA 1161 0.4341 MAVTHADLEPSPTRRNLITSKTGVFLMLFTILLGISSFLLCLVAEASCTAELCVYSGSVKKALICGGSASVALAIAIITEQFFRFVPVAQTSPELLSPETHSPSASTNSLPGQFGFFLFTTWMCFTAGETLLFGAMIAESGHVTTWSKPRARCPAVREGVYLAAGVFGLSTIECDFEVVVELVENSTVVNHPYSGLVQRIRDLMKHNWDVILVHAFREANRTVDFMAKLSYLPPSSLDMVDSSGKGSESDDVINHANPTSDSSEESPMMSSELKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGMNKGSTEEKKGKKSNGNNSKIGDSLKQRLMELGREVLMQKSTVERQRKKKLGEEEQAAVLLMALSYGSVYA 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2841 386 Pfam GATA zinc finger 277 310 IPR000679 GO:0006355|GO:0043565
Sto10g2841 386 MobiDBLite consensus disorder prediction 313 339 - -
Sto10g2841 386 Gene3D - 104 231 IPR036397 GO:0003676
Sto10g2841 386 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 270 311 - -
Sto10g2841 386 ProSitePatterns GATA-type zinc finger domain. 277 302 IPR000679 GO:0006355|GO:0043565
Sto10g2841 386 Pfam Reverse transcriptase-like 170 228 IPR002156 GO:0003676|GO:0004523
Sto10g2841 386 PANTHER OS01G0976800 PROTEIN 239 386 - -
Sto10g2841 386 MobiDBLite consensus disorder prediction 315 331 - -
Sto10g2841 386 CDD ZnF_GATA 276 311 IPR000679 GO:0006355|GO:0043565
Sto10g2841 386 ProSiteProfiles GATA-type zinc finger domain profile. 271 307 IPR000679 GO:0006355|GO:0043565
Sto10g2841 386 SMART GATA_3 271 328 IPR000679 GO:0006355|GO:0043565
Sto10g2841 386 Pfam Protein of unknown function (DUF1218) 100 171 IPR009606 -
Sto10g2841 386 PANTHER OS01G0976800 PROTEIN 239 386 - -
Sto10g2841 386 CDD RNase_H_like 155 228 IPR044730 -
Sto10g2841 386 MobiDBLite consensus disorder prediction 240 268 - -
Sto10g2841 386 Gene3D - 272 336 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2841 Sto-Chr10 38418342 38425510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2841 271 386 C2C2-Gata Transcription Factor Family AT3G06740 72.650 6.01e-52 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sto10g2841 RVT_3 7.8e-08 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2841 - - zju:107433211 190.66