Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2808 ATGAGTTCCAATTACGGCAATCCCAATCAACCcaaaccttcttcttcttctgcctcACTCAACAACTTCAATTTCGACTTTGATCTCGGGATCGGATCCAATCGACCCAAATCTCTCAACGATCagaaaaaccccaaaccctcctATTCATACTCTTCTTCTGCGCAGCCCAGACCCGCGTGGCAACCCAGCGCCAACAAGCCATCATGGACTCACCAGCCGGCTTCGAATCTGGCGGCTCAGCCCGGATTGCCCGCCGGACCCACTTCAATGGTTGGGGATATCTTTGGCAAGACTTGGGGATCCGCACAACCTTCGGCTTCCAGTTCGACCATTGGAGTTGTTAATAAGAACCCTAATCTCTTTGGGGATTTGGTGAGCTCTGCCTTGGGGCAGAATTCTAAGAGTAGCAGCAATACTCCTCTGAAGAATTCGACACCTATTTCCAAGGCATCAGGAAATTTGGCGGATTCTTTGCCTAAAACTAGTAATACCACGCAAAGTAGTGTAAGTTGGGGATCTTCTGGGTatagtaataaaaataatactaatagtaTGAACGCCAATAAGAGCCCAAATATTGGGGGTCCTTCAATGCGAAGTATGAATAGTAGTGGTTCAACTGGAAACggtataaatgttaataaagATCCATTTAGCTCTTTGGGTGGCTTTGGATCAAAGCAATCTGGTAGTCTTAATTCAGCTGGTAAGGGCACGAAGAGTAATGATACAGGGGATGATGGTTTTGGAGATTTCCAGAATGCTCCCAAACCAAGTTCGACCACATTCCCATCAAGTACTACCACGGCAGATAATATCAGCTTCACTGGAGCTACCAATCTGAATCAGAGCCCTATGCAGACATCTGGTGGTGGAGATCCTATGGACATGTTTTTCTcatctgcctcaggctcagccGGAAGTGCTAATATGGCTTCTGAAGGATTTGGAGGAAAAACCTCTTCAGAAATTGATGATTGGGGTTTGGACTCTGAGTTTGGAGGGGGAGGTCATGATGTGGGTGGTACAACCACTGAGCTTGAAGGGCTTCCACCTCCTCCTGCTGGGGTATCAGGTTCCACAGCAAAAGGTAAGGGGATGGACAATTACAAGCAGGGGCAGTTTCCTGATGCTATTAAGTGGCTGTCTTGGGCTATCATCCTTCTTGAGAAAGCAGGGGATAATGCAGGCACACTGGAGGTTTTATCATGTAGGGCTTCATGCTACAAAGAAGTTGGGGAGTATAAAAAGGCAGTAGCAGATTGTACAAAGGTTCTTGAAACCGATGAAACAAATGTATCTGTCCTGGTACAACGTGCTCTCTTGTATGAGAGCATGGAAAAGTACAAACTAGGTGCCGAAGACCTGAGGGCTGTTCTGAAGATTGATCCTGGTAATAGAGTTGCAAGAAGTACCGTTCATCGGTTGACAAAGATGGCCGAGTAG 1449 0.4348 MSSNYGNPNQPKPSSSSASLNNFNFDFDLGIGSNRPKSLNDQKNPKPSYSYSSSAQPRPAWQPSANKPSWTHQPASNLAAQPGLPAGPTSMVGDIFGKTWGSAQPSASSSTIGVVNKNPNLFGDLVSSALGQNSKSSSNTPLKNSTPISKASGNLADSLPKTSNTTQSSVSWGSSGYSNKNNTNSMNANKSPNIGGPSMRSMNSSGSTGNGINVNKDPFSSLGGFGSKQSGSLNSAGKGTKSNDTGDDGFGDFQNAPKPSSTTFPSSTTTADNISFTGATNLNQSPMQTSGGGDPMDMFFSSASGSAGSANMASEGFGGKTSSEIDDWGLDSEFGGGGHDVGGTTTELEGLPPPPAGVSGSTAKGKGMDNYKQGQFPDAIKWLSWAIILLEKAGDNAGTLEVLSCRASCYKEVGEYKKAVADCTKVLETDETNVSVLVQRALLYESMEKYKLGAEDLRAVLKIDPGNRVARSTVHRLTKMAE 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2808 482 Pfam Tetratricopeptide repeat 435 466 IPR019734 GO:0005515
Sto10g2808 482 MobiDBLite consensus disorder prediction 132 242 - -
Sto10g2808 482 MobiDBLite consensus disorder prediction 1 91 - -
Sto10g2808 482 Gene3D Tetratricopeptide repeat domain 360 481 IPR011990 GO:0005515
Sto10g2808 482 MobiDBLite consensus disorder prediction 132 370 - -
Sto10g2808 482 MobiDBLite consensus disorder prediction 1 28 - -
Sto10g2808 482 MobiDBLite consensus disorder prediction 255 291 - -
Sto10g2808 482 MobiDBLite consensus disorder prediction 35 78 - -
Sto10g2808 482 MobiDBLite consensus disorder prediction 302 318 - -
Sto10g2808 482 PANTHER OS03G0340700 PROTEIN 1 482 - -
Sto10g2808 482 SMART tpr_5 400 433 IPR019734 GO:0005515
Sto10g2808 482 SMART tpr_5 360 393 IPR019734 GO:0005515
Sto10g2808 482 SMART tpr_5 434 467 IPR019734 GO:0005515
Sto10g2808 482 SUPERFAMILY TPR-like 364 472 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2808 Sto-Chr10 38135704 38138802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2808 375 482 Calmodulin-binding Proteins AT3G25230 33.929 1.38e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2808 - - pvu:PHAVU_003G107800g 570.081