Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2770 ATGGTGTTGGGATGGAGGAGAAGaaagaacaagaacaagaacCCTAGAAATCTCGATTTGGAGATTGTGATTCCCGCCCATTTCAAATGCCCCATTTCTCTCGATTTGATGAAAGACCCCGTCACATTGTCCACCGGAATCACCTACGATCGCGACGCCATCGAGCGGTGGTTCCAGGACGGGAATTTCACGTGCCCTGTCACCAATCAGATTCTCACCACCTTCGATCTCGTCCCGAATCACGCGCTTAGGGTTTTGATTCAGGAATGGTGCGTCGAGAATCGGCGATTTGGGATCGACAGGATCCCGACCCCCAGAGTTCCGGTTTCTCCGATCGAAATCGCGGACGCGCTTCTCCACATGAAGGCCTCGGCGACGCGGTTGGATCGGTACGGGGTTATGGAGTCCGTTCAGAGAATCGAGAAATGGCGTTGCGAGAGCGAGAGGAACAAGAGGTGTATTGTGGAGAATGGTGCTGCGAGTGTGTTTAGCTTTGCGtttcatgcatttgcttcttCCATTGAGGAAAATGCGAGTGTGCTGGAGGAGATTTTGTGTGCCCTAAATTGGATGTTCCCAATTCAATTTGAATCCCAGAGGATTTTGGGATCTTCAAATTCCTTGCGTTGTATAGTTTGGTTCTTGAAGCACCAAGATCTTTCTGGAAAACAGAACGCCATTGTTGCTTTGAGGGAGATTCTCTGTTCTTGTGATGAACAGGTTTTGGAAGCCATGGCCGAAATTGAAGGAAACACCAAAGAATTACTAGTGGAgttgattaacaagagaatcagCCCAACAATCACAAAAGCTTCATTGATGATTGTTCATTACATGGTTTCATCTTCTTATCCTTCATGTGAGAAGGTGAAGCTGGAGTTTATTGAACTGGGTTTGATCTCTTCACTTCTGGAGATTCTAGTTGATACAGAGAAGAGCCTATGTGAGAAGGCTTTGGGTGTTTTTGATTCACTATGTAGTTGTGTAGAAGGGAGAGAGAAAGCTTATAGTAATGCTCTGACAATTCCTATATTGGTGAAGAAGATTCTGAGAGTTTCAACTTTGGCAACAAATTACTCTGTTTCTGCTATATGGAAGCTGTGTAGATATGGacataaagatgataatgatgaagaagaagaagatgaagaagaagctcTGGTTGAGGCACTTCAAGTTGGTGCATTTCAGAAGCTTTTGGTGGTATTGCAAGTTGGTTGTGATGATGAGACAAAGGAGAAAGTAAATGAACTTCTTAAATTGTTGAATCCCTACAGGGCTGGATTGGAGTGTATAGATTCAGATTTTAAGAATCTCAAGAGGTCATTTTGA 1332 0.4144 MVLGWRRRKNKNKNPRNLDLEIVIPAHFKCPISLDLMKDPVTLSTGITYDRDAIERWFQDGNFTCPVTNQILTTFDLVPNHALRVLIQEWCVENRRFGIDRIPTPRVPVSPIEIADALLHMKASATRLDRYGVMESVQRIEKWRCESERNKRCIVENGAASVFSFAFHAFASSIEENASVLEEILCALNWMFPIQFESQRILGSSNSLRCIVWFLKHQDLSGKQNAIVALREILCSCDEQVLEAMAEIEGNTKELLVELINKRISPTITKASLMIVHYMVSSSYPSCEKVKLEFIELGLISSLLEILVDTEKSLCEKALGVFDSLCSCVEGREKAYSNALTIPILVKKILRVSTLATNYSVSAIWKLCRYGHKDDNDEEEEDEEEALVEALQVGAFQKLLVVLQVGCDDETKEKVNELLKLLNPYRAGLECIDSDFKNLKRSF 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2770 443 SUPERFAMILY ARM repeat 175 383 IPR016024 -
Sto10g2770 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 98 IPR013083 -
Sto10g2770 443 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 443 - -
Sto10g2770 443 Pfam U-box domain 24 95 IPR003613 GO:0004842|GO:0016567
Sto10g2770 443 Gene3D - 120 422 IPR011989 -
Sto10g2770 443 PANTHER WDSAM1 PROTEIN 14 443 IPR045185 GO:0061630
Sto10g2770 443 CDD RING-Ubox_PUB 28 70 IPR045210 -
Sto10g2770 443 SUPERFAMILY RING/U-box 22 100 - -
Sto10g2770 443 SMART Ubox_2 27 90 IPR003613 GO:0004842|GO:0016567
Sto10g2770 443 ProSiteProfiles U-box domain profile. 23 97 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2770 Sto-Chr10 37857219 37858550 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2770 5 443 U-box Gene Family AT5G37490 44.690 1.39e-111 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2770 - - gmx:100794340 556.214