LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto10g2745	CTGATTCGGTTTCAGATTTTGTTTGGAAAGGGATACGGATTAGAGAATCAGAATCTGATTGATCTGGACCAAATAGAAGGAATCAAGTCAAACAACTCTGGCAGTGTTAGTAACCACCAGTCCTATGATGGCACAAAATCTGAAAAGGTTGCCTTATTTAAAGATAAAACTCCTAATGGAAATCACCATATTCCTAAGGTGAGGAAACCATATACCATTTCTAAGCAAAGGGAAAAGTGGACAGAGGAAGAGCATCAGAAGTTCCTTGAAGCCTTAAAATTGTATGGTCGTGGATGGCGTCAAATTGAAGAACATATAGGTACTAAAACTGCTGTTCAGATTCGAAGCCATGCTCAGAAGTTCTTTTCTAAGGTTGTGAGGGAATCTGATGGCAGTGCTGAGAGTCCTATAAAACCAATTGATATTCCTCCTCCTCGGCCAAAGAGGAAACCTCTGCATCCATATCCCCGTAAATCAGTTGATTCTTTCAAAGGGCACTCCATAGCAAATGAACCAGAAAGATCTCCATCCCCCAACCTGTCAGTTGCAGAGAAAGACACCCAATCACCAACCTCTGTGCTATCTGCAGTTAATTCAGAAACGTTTGGGCCAGCTTTTTCAGAGCCAACTAACAGATGTTACTCACCAAATTCTTGCACCACTGACGTTCACTCGGCCAGCTTATCACCTGTTGAGAAGGAAAATGATTGCATGACATCTAACTCATCTGAGGAGGAAGAGAAAGGATCTCTAGCTTCAGTCTCTTTAGCTAACTTGGGCCTACACCTGTCCAAGAAGTCCGAGTTGAGTTCCAAGGAAACTGAATGCTTGAAGGAAGATGCTACCACCAATGCTCCACAAGTTGCAAGTATTAAAATTTTTGGAAGAACTCTCTCCATGGTAGATAATCAGAAGAAGTCACTGGATGAAGATGGGGAGAGTAGTAAGTCAATTACTTGCAAGTCTGATCAAATGGATATTGTTGAGAGTGAAAAGCTTGGCCAAGAATGGCCATCCAACCAACTAAATACACAATTATCGCTGGGTATGTCTAATAGTACTGACTGGAATGTAACTCCTGAAGGAGTTGAAGCGAAATGCTTCGAATATCCGAAAGAGAAACTGAGCTTAGTGGAACCTGTACCTAATAAAACCTTGTCATGCTGGAACATGTACCAAAGTGTTCCAGTTTTCTACCTTAACCCATGTAaccaaattctaaatcctacACCTGTTCGTCCCTCTTTGAAAGACAGAATGACAGAGAAGGAAAGTTCTTGTACTGGTTCAAATGCTGAACCAGTTTGTGAAATAGGAATGGGAGACAAAAACTCAGAAGCTGACGATTCTCAAAGCCAATCCTCTCATCCCGAGGGAAAAATTGTACCCCACAAAAACTCTTCTTCAAGTGGGTTTGTACCATACAAAAGATGTTTATCTGAAAGAGATGTAAATTCAGCCATTGTTGCCTTGGAAGAGAGGAAGGGACAACGAGCTCGGttacACGAAAGCAAAGAAGAAACGAAAAACGGAAAAGAAGGAGCAGGAACACAGGCCCTAAGGCCTCACGAAGATTGTACCCGCCATGTCAGCCAGCAAAGGAAGCTTGACGGCAGAGGGCGGTTCTTCTCAAATGGTAAACTTGGCGTCGCCGTAAGCACCTATCTTAGCGAGGGCATCGGCACAGAAATTAGCCTCTCTTAA	1704	0.4225	LIRFQILFGKGYGLENQNLIDLDQIEGIKSNNSGSVSNHQSYDGTKSEKVALFKDKTPNGNHHIPKVRKPYTISKQREKWTEEEHQKFLEALKLYGRGWRQIEEHIGTKTAVQIRSHAQKFFSKVVRESDGSAESPIKPIDIPPPRPKRKPLHPYPRKSVDSFKGHSIANEPERSPSPNLSVAEKDTQSPTSVLSAVNSETFGPAFSEPTNRCYSPNSCTTDVHSASLSPVEKENDCMTSNSSEEEEKGSLASVSLANLGLHLSKKSELSSKETECLKEDATTNAPQVASIKIFGRTLSMVDNQKKSLDEDGESSKSITCKSDQMDIVESEKLGQEWPSNQLNTQLSLGMSNSTDWNVTPEGVEAKCFEYPKEKLSLVEPVPNKTLSCWNMYQSVPVFYLNPCNQILNPTPVRPSLKDRMTEKESSCTGSNAEPVCEIGMGDKNSEADDSQSQSSHPEGKIVPHKNSSSSGFVPYKRCLSERDVNSAIVALEERKGQRARLHESKEETKNGKEGAGTQALRPHEDCTRHVSQQRKLDGRGRFFSNGKLGVAVSTYLSEGIGTEISLS	567

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto10g2745	567	Gene3D	-	79	126	-	-
	Sto10g2745	567	MobiDBLite	consensus disorder prediction	226	250	-	-
	Sto10g2745	567	PANTHER	SWI/SNF COMPLEX-RELATED	23	491	-	-
	Sto10g2745	567	MobiDBLite	consensus disorder prediction	445	468	-	-
	Sto10g2745	567	MobiDBLite	consensus disorder prediction	172	193	-	-
	Sto10g2745	567	Pfam	Myb-like DNA-binding domain	77	120	IPR001005	-
	Sto10g2745	567	ProSiteProfiles	Myb-like domain profile.	72	122	IPR001005	-
	Sto10g2745	567	MobiDBLite	consensus disorder prediction	126	193	-	-
	Sto10g2745	567	SUPERFAMILY	Homeodomain-like	71	125	IPR009057	-
	Sto10g2745	567	MobiDBLite	consensus disorder prediction	494	528	-	-
	Sto10g2745	567	PANTHER	PROTEIN REVEILLE 7-RELATED	23	491	-	-
	Sto10g2745	567	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	72	126	IPR017930	-
	Sto10g2745	567	SMART	sant	76	124	IPR001005	-
	Sto10g2745	567	CDD	SANT	79	122	IPR001005	-
	Sto10g2745	567	MobiDBLite	consensus disorder prediction	143	160	-	-
	Sto10g2745	567	MobiDBLite	consensus disorder prediction	412	468	-	-
	Sto10g2745	567	ProSiteProfiles	SANT domain profile.	75	126	IPR017884	-
	Sto10g2745	567	TIGRFAM	myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class	75	124	IPR006447	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto10g2745	Sto-Chr10	37630100	37638899	Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB-related	Sto10g2745		Myb_DNA-binding	2e-13	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto10g2745	-		-	gmx:778089	538.495