Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2726 ATGAGGATTCAAAGTTATACATATCTCCACACTGAACTCCTCTTCAATATCCTAAACCGTCTTCCAGTGAAGACCCTTCTCCGTTTCAAGTGCGTTTCCAAGGAATGGCTCGAAATCATTTCCAGTCGTTCCTTCATCAAAGCTCAGATGGATAAGACAGAGTTAATCCTATCAGGATTCTTTTTCCAGGAAAAGTTCACATGGAGCAGTGAAGACATCAAGATCATCAATTACATGAAAATCCCTCGTTTTGATCATCATGATTCCATCACAAGTTCAGAAGCCATTATTGATCGTGGAATCCTCAGCTTCCTCCCTGAACAAGTTGTTGTCTTAGCCTCGTGCAATGGCTTAATCTGCTGCCGCAGCTGCTTCCCTCAATATACATACAAAGCAGAAACAACTCTTTATGTCTGCAACCCCACAAACAAAGAATACATTTGCTTGACTTGTGTTGATTACAAGAGATGTGAAAGCATAGCTTTAGCTTTTGATCCAAGTGAAGAAGACTTCAAAGACAAGTCTACCAAGTTCAGCTTGGTCAAAGTCAAGCCAATCCCCATTTTGAACGACGAGAatgatgatgaggatgaagAATATGGGTACTTTGAATTCTGGATATACTCATCAGAGACAAGATTGTGGGTGAGATCTAAAGAGTTGTGCAAGTATGAGAACAAATGGATCAAGAAACAAGGAATTTACTTTGGGGGTGTCTTACATTGGCTCACAAATGGTGATGAAATCCTCACTTTTAATGTTGGGAATGAGCGATCCTGGTTAATTTCAACCCCACTTCCATCCAACGAGTTCAAAACCAAAACTGTCGCTTGCATTGGAGAATCCAAGGGGATTCTTCACTATGTCATGGTATCTGAACATGGTCTTCACGTGTGGTGCCTTGAAGATTACTATGAGGTTAAGTGGGAACTCAAGTTTTGGAAATCACTGGAGGAGATTGAAGGAGACTATCCCCaattcttcttcaatttgaaGAGGAGGGTTTTGATGCAGGAAATGACTGATGGTGATGTGACTCCATGGATGGATCCTTTGGCATTCAAAGATGGGGTTTTGTTGATAAAGGTTTGTGGTAATCTCTACCTCTATGACATTGAGAAGAACAAGATGATTCAAGCTTGTAATCTTCAACACTTGAATGCTAAAAACTTGCCAGATGCTATTGTGCTTCCTTATTGCTTGAGTTTGTGCAACTCCACCGTCTCCATTACGCCTTCGTCTTCGTCTGATCTCATCTGCCCCAATTGCAACGGTGGGTTCATTGAGGAAGTCGATAATCCAATCCCTAATCCCAATCCCTTCGCGTCGTTCACCGCCGAGtttggcggcggcggcggcattCCTCTAGTGTTCTCTGCCAGTTCCGCCGGCGGCGGAGGCGGTGGGCCGATATTTGACGATCTCTCTGCCCTCTTTGGTGGTGGACCAAACCGATCGTCTCCGTTCGGAGATACTGATGCGTTCAACCCTTTCGTGTTTCTTCAGAACTATCTTCAAACCCTGAGAGCCGGCGGTGCTAATGTTCAATTCGTGATAGAGAACTCCGGAGACCCAAGTGGAGGCTTCCGTCTCCCCACGAATCTCAATTTCGGTGATTATTTCTTCGGGCCTGGTCTTGAGCAATTGATTCAACAGCTTGCGGAGAACGATCCGAACCGATATGGGACGCCTCCAGCTTCGAAATCTGCCATCGAAGGGCTTCCTATTATTAAGATTTCGGAGGAGTTGTTAGCTTCCGATTCATCGCAGTGTGCAGTGTGTAAAGATACATTTGAGCTAGGGGAAGAGGCGAAGCAGATGCCGTGTAAACATATTTATCATTCAGATTGCATTTTGCCCTGGTTGGAATTGCACAATTCTTGTCCTGTTTGCCGCTACGAGTTACCAACTGATGATCCCGACTACGAGCAAAGAACTCGTGGGACCTCTACGCAGGTGAATCGAAGCCAATCTGTAGGGGCCGGTGGGTTTGCTGATTCTTCTGGAGGTGGTAATGGTGGCGGCAACCGTGTTGGTGGTAGTGCAGCTTCTGGAGATGACACGCAGTCACCGAGAGAGcgcaggtttagggtttctttgCCTTGGAATTTTAGGCAATTGGCTCCTGTTGCGGAGACTAGCAATACTGGGAATACCAACGTCGGAGGAAACAATAGCGGGGAATCAAATCCTGGAAGAAGTGGAAACCAGAATTTTGAGTCGGAGACCAGACAAGAAGATCTCGATTAA 2250 0.4373 MRIQSYTYLHTELLFNILNRLPVKTLLRFKCVSKEWLEIISSRSFIKAQMDKTELILSGFFFQEKFTWSSEDIKIINYMKIPRFDHHDSITSSEAIIDRGILSFLPEQVVVLASCNGLICCRSCFPQYTYKAETTLYVCNPTNKEYICLTCVDYKRCESIALAFDPSEEDFKDKSTKFSLVKVKPIPILNDENDDEDEEYGYFEFWIYSSETRLWVRSKELCKYENKWIKKQGIYFGGVLHWLTNGDEILTFNVGNERSWLISTPLPSNEFKTKTVACIGESKGILHYVMVSEHGLHVWCLEDYYEVKWELKFWKSLEEIEGDYPQFFFNLKRRVLMQEMTDGDVTPWMDPLAFKDGVLLIKVCGNLYLYDIEKNKMIQACNLQHLNAKNLPDAIVLPYCLSLCNSTVSITPSSSSDLICPNCNGGFIEEVDNPIPNPNPFASFTAEFGGGGGIPLVFSASSAGGGGGGPIFDDLSALFGGGPNRSSPFGDTDAFNPFVFLQNYLQTLRAGGANVQFVIENSGDPSGGFRLPTNLNFGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIEGLPIIKISEELLASDSSQCAVCKDTFELGEEAKQMPCKHIYHSDCILPWLELHNSCPVCRYELPTDDPDYEQRTRGTSTQVNRSQSVGAGGFADSSGGGNGGGNRVGGSAASGDDTQSPRERRFRVSLPWNFRQLAPVAETSNTGNTNVGGNNSGESNPGRSGNQNFESETRQEDLD 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2726 749 Pfam zinc-ribbon 404 430 IPR039525 GO:0061630
Sto10g2726 749 ProSiteProfiles F-box domain profile. 3 49 IPR001810 GO:0005515
Sto10g2726 749 MobiDBLite consensus disorder prediction 646 663 - -
Sto10g2726 749 MobiDBLite consensus disorder prediction 708 739 - -
Sto10g2726 749 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 399 714 - -
Sto10g2726 749 TIGRFAM F_box_assoc_1: F-box protein interaction domain 113 339 IPR017451 -
Sto10g2726 749 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 399 714 - -
Sto10g2726 749 SUPERFAMILY RING/U-box 571 639 - -
Sto10g2726 749 Pfam Ring finger domain 590 632 IPR001841 -
Sto10g2726 749 SMART fbox_2 9 49 IPR001810 GO:0005515
Sto10g2726 749 MobiDBLite consensus disorder prediction 636 693 - -
Sto10g2726 749 ProSiteProfiles Zinc finger RING-type profile. 591 632 IPR001841 -
Sto10g2726 749 MobiDBLite consensus disorder prediction 707 749 - -
Sto10g2726 749 Pfam F-box domain 11 44 IPR001810 GO:0005515
Sto10g2726 749 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 553 638 IPR013083 -
Sto10g2726 749 SUPERFAMILY F-box domain 7 70 IPR036047 GO:0005515
Sto10g2726 749 Gene3D - 1 45 - -
Sto10g2726 749 SMART ring_2 591 631 IPR001841 -
Sto10g2726 749 CDD RING-H2_RNF126_like 590 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2726 Sto-Chr10 37468132 37471896 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2726 532 647 C3H Transcription Factor Family AT5G01980 50.862 1.32e-32 130
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g2726 10 37468132 37471896 Sto10g2726 10 37468132 37471896 ECH