Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2575 ATGCCTTCTCTATATGTCTCTGAGAGCCCTAAAgcgaagaaggagaagaagaagaagatgaagaacgAGACTTCCACTGAAGAAGCAGCTTCAGACCTCGAAGCATCGATTGGTAAGAAGAGTTCAAAGATTGCAGGATATGTGAAGGGTTCGGATTCTGACCAAGATAGGATTTCGGACAAGAAggcgaagaagaaggagagtaaGAAGCGTAAGTCTTTGGATATTGATGAGGATGGGGAGAGGAGCGAGACTAGTTCGGAGTTGGTTGAGCCTGAAAGTTCGAGAGCGAAGAgtgaggagaagaggaagagtaataAAAAGCCGAAATTCGAGGAACCTGCTGACATGGGAGAGGAgggagagaaggaggaggatcCCAATGCAATTTCCAACTTCCGGATATCGGAGCCGTTGAAGGCGAAGTTGAAGGAGAAGGGGATTGAATCGCTTTTCCCCATTCAGGCCATGACTTTCGATACCATTCTCGACGGGTCTGATTTGGTCGGTCGGGCTCGCACCGGTCAGGGTAAAACTTTGGCTTTTGTTTTGCCCATATTAGAGTCTTTAACAAATGGTCCGGCAAAAGGATCAAGAAAGACTGGTTATGGGAGGTCTCCAAGTGTTCTTGTGCTTTTACCTACTAGAGAATTGGCCTCACAGGTGTTTGCTGATTTCGAAGTTTATGGTGGAGCATTGGGTTTAAGTTCTTGCTGTTTATATGGTGGAGCTCCTTATCAAACTCAAGAACTAAAGCTCAAGAGAGGTGTTGATATTGTTGTCGGAACACCAGGCCGCATAAAGGATCATATAGAGAGGGAAAATATTGACCTTAGTCAACTTAAGTTCCGTGTACTTGATGAGGCAGATGAGATGCTCAGGATGGGTTTTGTTGATGATGTTGAACTCATTTTAGGCAAGGTTAAAGATGTTAGTAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAGACTGGGTTAAGCATATTTCCTCAAAGTTTCTTAAATCGGATAAGAAAACAGCTGATCTTGTTGGGAATGAGAAAATGAAGGCCAGCACAAACGTTAGGCATATTGTTCTTCCATGTAATAGTTCTGCCAGGTCCCAGCTTATCCCAGACATCATTCGCTGCTATAGCAGTGGAGGCCGGACAATTATATTTACTGAGAAAAAGGAGTCTGCCTCGGAGCTTGCAGGGCTGTTGCCTGGCGCCCGAGCTCTGCATGGTGACATACAACAATCGCAACGTGAGGTTACATTGTCCGGTTTTAGGTCTGGAAAATTCTTGACATTGGTAGCCACAAATGTGGCAGCTCGGGGATTGGATATTAATGATGTTCAGTTAATTATTCAGTGCGAACCTCCACGTGATGTAGAAGCCTATATTCATCGTTCTGGTCGCACAGGACGAGCAGGTAATACTGGAGTTGCTGTTATGCTTTATGATCCAAGAAGGTCTAATATATCTAAGATAGAAAGAGAATCGGGTGTGAAATTTGAACACATATCTGCCCCTCGGCCTGCTGATATTGCTAAAGCTGTTGGTGGGAATGCTGTTGAAATGATAAGCCAAGTGTCTGATAGTGTGATTCCTGCTTTCAAGTCTGCTGCTGAGGAGCTGTTGGAGAGCTCTGGTCTATCGGCTGCTGAATTACTTGCAAAAGCTCTTGCCAAGGCTCTTGGTTACACTGATATAAAGAAAAGATCACTTCTCAGTTCCATGGAGGACCATGTCACATTACTTCTTGAGATTGGAAAACCCATCTACACCCCATCCTTTGCTTATGGAATCCTGAGGAGGTTCTTGACTGAGGAGAAGGTGGAGGCAGTGGTGGGTCTTACAATTACTGCAGATGGAAATGGTTGTGTTTTTGACGTGCCAGCGGGAGATCTAGATGTGTATCTTTCTGGTCAGGAAAATGCTGCTAATGTAAGCTTAGAAGTAATAGAGGTATTGCCGCCACTGCAAGAAAGGGAATCGAGAGGCAGAttcggtggtggtggtggtggtcgaGGCGGGTTTGCTAATAGaaatggtggtggtggcgggAACAGGTTTTTCGGTGGAAGAGGAGGTGGTGGCAGGAATGGTGGATTTTCAAATCAGAGGAGTGATAGGTTTTCCGGTGGGAGAGGTCGCGGCGGCGGCGGCAACAGGGGAGTAAAGAGGTGGTAA 2178 0.4238 MPSLYVSESPKAKKEKKKKMKNETSTEEAASDLEASIGKKSSKIAGYVKGSDSDQDRISDKKAKKKESKKRKSLDIDEDGERSETSSELVEPESSRAKSEEKRKSNKKPKFEEPADMGEEGEKEEDPNAISNFRISEPLKAKLKEKGIESLFPIQAMTFDTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKGSRKTGYGRSPSVLVLLPTRELASQVFADFEVYGGALGLSSCCLYGGAPYQTQELKLKRGVDIVVGTPGRIKDHIERENIDLSQLKFRVLDEADEMLRMGFVDDVELILGKVKDVSKVQTLLFSATLPDWVKHISSKFLKSDKKTADLVGNEKMKASTNVRHIVLPCNSSARSQLIPDIIRCYSSGGRTIIFTEKKESASELAGLLPGARALHGDIQQSQREVTLSGFRSGKFLTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNISKIERESGVKFEHISAPRPADIAKAVGGNAVEMISQVSDSVIPAFKSAAEELLESSGLSAAELLAKALAKALGYTDIKKRSLLSSMEDHVTLLLEIGKPIYTPSFAYGILRRFLTEEKVEAVVGLTITADGNGCVFDVPAGDLDVYLSGQENAANVSLEVIEVLPPLQERESRGRFGGGGGGRGGFANRNGGGGGNRFFGGRGGGGRNGGFSNQRSDRFSGGRGRGGGGNRGVKRW 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2575 725 MobiDBLite consensus disorder prediction 1 131 - -
Sto10g2575 725 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 44 693 - -
Sto10g2575 725 Gene3D - 351 578 IPR027417 -
Sto10g2575 725 MobiDBLite consensus disorder prediction 70 117 - -
Sto10g2575 725 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 159 341 IPR014001 -
Sto10g2575 725 MobiDBLite consensus disorder prediction 9 28 - -
Sto10g2575 725 Gene3D - 75 341 IPR027417 -
Sto10g2575 725 CDD DEADc 139 336 - -
Sto10g2575 725 MobiDBLite consensus disorder prediction 660 725 - -
Sto10g2575 725 CDD SF2_C_DEAD 356 482 - -
Sto10g2575 725 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 285 293 IPR000629 -
Sto10g2575 725 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 206 485 IPR027417 -
Sto10g2575 725 SMART helicmild6 396 473 IPR001650 -
Sto10g2575 725 Pfam DEAD/DEAH box helicase 152 329 IPR011545 GO:0003676|GO:0005524
Sto10g2575 725 SMART ultradead3 147 359 IPR014001 -
Sto10g2575 725 Pfam GUCT (NUC152) domain 562 657 IPR012562 GO:0003723|GO:0004386|GO:0005524
Sto10g2575 725 Gene3D - 579 651 - -
Sto10g2575 725 Pfam Helicase conserved C-terminal domain 375 473 IPR001650 -
Sto10g2575 725 SUPERFAMILY RNA-binding domain, RBD 566 649 IPR035979 GO:0003676
Sto10g2575 725 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 370 512 IPR001650 -
Sto10g2575 725 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 44 693 - -
Sto10g2575 725 CDD GUCT_RH7_like 569 654 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2575 Sto-Chr10 36027641 36033991 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2575 115 512 Eukaryotic Initiation Factors Gene Family AT1G72730 29.584 1.08e-41 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2575 K16911 - jre:108998595 934.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g2575 10 36027641 36033991 Sto10g2575 10 36027641 36033991 ECH