Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2568 ATGGGGAGAGCACCCTGTTGTGATAAAGATGGAGTAAGAAAGGGAGCTTGGACTCCTGAAGAAGATCAAGTCTTGGCTGAGTACATCAAGAAGCATGGCCATGGTAGTTGGCGTACACTCCCCAAGCAAGCAGGGCTACTTCGATGTGGAAAAAGTTGTCGACTTAGGTGGATAAACTATCTTCGCCCTGACATTAAGCGTGGCCCTTTTACTGCTGAAGAAGAAGGTACAATTATTCAACTTCATGGCATGCTCGGCAACAGGTGGGCTGCTATAGCATCTCAGTTACCTGGAAGAACAGACAATGAAATTAAGAATTTCTGGAACACCCATCTGAAGAAGCGTCTCCTTCGCTCGGGTAATTCCCTTGGAGCTCAAGAGCTCTCTTTCAGTCCTGATCAAAGTGATGTAAAATCTGAATCCCCTTCTTTACGTCACATGGCACAATGGGAAAAGGCCAGAGTTGAGGCAGAAACTAGGCTGTCAATGGAGCTGGAATCCTCGTTGCTTAATTCTTGTTCAACAACTAACTCACTCCCTGATCACTTTCTTCAACTTTGGCATTCTGACGTAGGACAATCATTTCGCGACATCACGAAGAAGGAACCCGTAAGCCAAAGCCCTACCTCACAAGCAAGCAGTGCCTTTGCCAACATGACTCAAGAGCAAGCAAGTATCTGCCAACCTAAGCTTGATGATGGCACAGCTGGTTCAGAGTCAGATTCTTACAAATTTCTTGATACTTCTGATTCTGCATTAAAGCTCCTGCTGGATATGCCTGACGGTAATATAGGATTCTTAGAAGGATTAGGACAGACTGAGAGTTTTCTATGTCCCCTTAATGGTAGATGTGATTAA 858 0.4499 MGRAPCCDKDGVRKGAWTPEEDQVLAEYIKKHGHGSWRTLPKQAGLLRCGKSCRLRWINYLRPDIKRGPFTAEEEGTIIQLHGMLGNRWAAIASQLPGRTDNEIKNFWNTHLKKRLLRSGNSLGAQELSFSPDQSDVKSESPSLRHMAQWEKARVEAETRLSMELESSLLNSCSTTNSLPDHFLQLWHSDVGQSFRDITKKEPVSQSPTSQASSAFANMTQEQASICQPKLDDGTAGSESDSYKFLDTSDSALKLLLDMPDGNIGFLEGLGQTESFLCPLNGRCD 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2568 285 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Sto10g2568 285 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Sto10g2568 285 CDD SANT 69 112 IPR001005 -
Sto10g2568 285 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 268 - -
Sto10g2568 285 CDD SANT 16 61 IPR001005 -
Sto10g2568 285 Gene3D - 69 116 - -
Sto10g2568 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Sto10g2568 285 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Sto10g2568 285 Gene3D - 14 66 - -
Sto10g2568 285 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Sto10g2568 285 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Sto10g2568 285 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 268 - -
Sto10g2568 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Sto10g2568 285 SMART sant 66 114 IPR001005 -
Sto10g2568 285 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2568 Sto-Chr10 35988638 35991263 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2568 1 268 MYB Transcription Factor Family AT3G61250 55.872 7.95e-99 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sto10g2568 Myb_DNA-binding 2.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2568 K09422 - gmx:100782075 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g2568 10 35988638 35991263 Sto10g2568 10 35988638 35991263 ECH