Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2566 ATGGCCATGGCTGCTGGAGCTCTATTCCCCTTAAGACAGAGAAATGGAAAGAGCTGTAGATTAAGGTGGATAAACTATCTAAGGCCAGGATTAAAGAGAGGGATGTTCAGCAAATTGGAAGAAGAGACAATCCTGACCCTTCATCACATGTTAGGCAACAAGTGGTCTCAGATAGCAGCACACTTACCAGGAAGGACAGACAATGAGATAAAGAACCATTGGCATTCATatttgaagaagaaagtggCAAAAGCAGAGGAAAACACAGAATCCCATAACCATAAACAAATGCAATTTGCTAGCTCATCAAGctcagataataataataataacaataataccattgattcttcttcttcttcttcaccttctCACCAAAACCCATCAATTCCAAATCACTATTCTCCATCACAAAGCCATGGCTTCAACAAAGACAAGACTTGTCAAAGCTCCTTACCAAAACTTCTATTTGCTGAATGGCTCTCActagatcatcatcatcatcatcttcattcaCTGCCTGCAAATACAAGTGGTGGTGATGAATCTTCAGTGTTCAGAAATGGTGGGGATTTCTATCAATACTCAGATTTCAATGAAGCTTCAAtaatgcatcatcatcatcatgatgaAGGAGTAATGATGACCTATGGTGGTGTGGAGTTTCATAATGATCTAACAACTCCAATTATTTCTGGAGAAgctaataatgatgatgaagtgTTCAATAATTCACAGCTTAAGTTTGCAAATCAAATGGTGGGAAATGGGAATATCATCCATTTCCCAAGTTTCAGTATCAGCAATGATTTGATGTACATATAG 825 0.3224 MAMAAGALFPLRQRNGKSCRLRWINYLRPGLKRGMFSKLEEETILTLHHMLGNKWSQIAAHLPGRTDNEIKNHWHSYLKKKVAKAEENTESHNHKQMQFASSSSSDNNNNNNNTIDSSSSSSPSHQNPSIPNHYSPSQSHGFNKDKTCQSSLPKLLFAEWLSLDHHHHHLHSLPANTSGGDESSVFRNGGDFYQYSDFNEASIMHHHHHDEGVMMTYGGVEFHNDLTTPIISGEANNDDEVFNNSQLKFANQMVGNGNIIHFPSFSISNDLMYI 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2566 274 Gene3D - 35 127 - -
Sto10g2566 274 ProSiteProfiles Myb-like domain profile. 28 78 IPR001005 -
Sto10g2566 274 SMART sant 32 80 IPR001005 -
Sto10g2566 274 MobiDBLite consensus disorder prediction 82 145 - -
Sto10g2566 274 Gene3D - 4 32 - -
Sto10g2566 274 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 82 IPR017930 -
Sto10g2566 274 Pfam Myb-like DNA-binding domain 33 78 IPR001005 -
Sto10g2566 274 MobiDBLite consensus disorder prediction 94 145 - -
Sto10g2566 274 PANTHER MYB DOMAIN PROTEIN 55 13 259 - -
Sto10g2566 274 SUPERFAMILY Homeodomain-like 11 85 IPR009057 -
Sto10g2566 274 PANTHER MYB TRANSCRIPTION FACTOR 13 259 - -
Sto10g2566 274 CDD SANT 36 78 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2566 Sto-Chr10 35973991 35978027 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2566 13 167 MYB Transcription Factor Family AT5G52260 53.205 6.89e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sto10g2566 Myb_DNA-binding 1.5e-14 CL0123