Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2563 ATGGGTGTGAAGCATTTGTGGGATATCCTCGAATCTTGCAAGAAAACAGTTCCACTTCACCATCTTCAGAACAAGAGGATATGCATAGATCTCTCTTGCTGGATTGTGCAACTTTACACTGCGAGCAAATCACACTCTTGTGTGAAGGAGAAAATCTACCTCAGAAGTCTCTTTCACCGCCTTAGAGCACTCATTGCTTTGAATTGCAGTCTAATTTTCGTTACAGATGGATCAATTCCTGCTATTAAATTATCAACTTATAGGCAGCGCTTAACCTCCAGAAAAGAGGTAGCATTAAAAGAATCTAACTTACAGAAAGTGTCTTCCTTACGGAGAAACATGGGATCTGAGTTTTCTTGCATGATAAAAGAGGCTAGTATCTTGGGGATGGCTCTTGGCATCCCTTGTTTGAATGgGATTGAAGAAGCTGAAGCTCAGTGTGCTTTGCTGAACTCCGAATTATTATGTGATGGATGTTTCAGTGCCGATTCAGATATCTTTCTTTTTGGTGCAAGGACAGTGTACAGGGATATCTGCCTTGGAGATGGTGGATATGTTGTTTGTTATGAGATGGCAGACATTGAAAGAGAACTTGGATTTGGAAGGGACTCATTGATTGCTCTCGCTGTACTTCTTGGCAGTGACTACAATCAAAGAGTTTATGGTGTGGGTCTGGAGTCAGCTTGTCAGATAGTAAAATCGATTGGGGACAAAtttgtgcttcaaaaacttgcttCTGAAGGACTTGAATGCCTGAAAAGACCAAAAGGTGGGAAGAGATTGGGGCAAGTTTTCAAGAGCAGtaacaaagaaaatatattgGACAGTGATATGAAATTGATTCACGGTATAGCATTTATATTACTTATATGTCTATCGTTTGTACATTCAGGAAGTGAGAATAATTCACAAAGAGATAACCACTTCTTGCAAGTTATCAATGCTTATATGAAGCCAAAATGCCACCAGGCAGATTCTGATACTGTGATGAGTGCTCTTGCGCAATATCCGTTTCAACGTAGTAAACTACATCAGATATGTGCTGAATTCTTTCAATGGCCTCCAGAGAAGACAGATGAATATATCCTTCCAAAGATTGCTGAAAGAGATTTACGGCGATTTTCCAATTTCTGCTTAACTTCATCAGAAGCTGGACTGAAGCTACCTTTACATGAGATCCCTGTGAAGTGTCCAGTGTCAGAAATCATCAAGTGCCGAAAAGTTCAAGGAAGGGAATGCTATGAGGTGGCATGGAATGAAATGGATGGACTTACAACTTCAATAGTACCAGCAGATCTCATAGAAAGTGCCTGTCCTGAGAAGATTTTAGAGTTTGAGGAGAAAAAAGCAAAAcccaagaaacaaaatgttcaaaaaagaagaccaaagaaaactgAAGCTGCAACTTCTATGGCTGAACTTGACCTGAAACTGAAGAATTTGTTGCTGGATATCAATCTAGGAGGCCATGCCAATCACAATTCTTCTGATTTGTCAGAACAGGTATTTGAAGATACCTCTGTTATGGATGAAGCTGATGTGAATAACGAGGAGGATTTCTTTCATTCACCACATGGTTTAGAACAGATTGGGTTGGATCAGAATATCAGCAATATATCAAACCATAGGTCTGATTCCATCATATCTAAAGATGAGGTCATTGATCTACTGAGCCCTTTGCCACAAAAACAATCCCATGCTTCCTCCAAATGTCAAAGATCTAATGGTCAACATATTGAGGTGATTGATCTGAGTGACTCAGAAAATGACACATCACCTGAACATGAGAAGAAAGCAAAGGAGCTAAGATTGTTCTTAGCAAGCATTAGAAATGACTTACATTGA 1845 0.3816 MGVKHLWDILESCKKTVPLHHLQNKRICIDLSCWIVQLYTASKSHSCVKEKIYLRSLFHRLRALIALNCSLIFVTDGSIPAIKLSTYRQRLTSRKEVALKESNLQKVSSLRRNMGSEFSCMIKEASILGMALGIPCLNGIEEAEAQCALLNSELLCDGCFSADSDIFLFGARTVYRDICLGDGGYVVCYEMADIERELGFGRDSLIALAVLLGSDYNQRVYGVGLESACQIVKSIGDKFVLQKLASEGLECLKRPKGGKRLGQVFKSSNKENILDSDMKLIHGIAFILLICLSFVHSGSENNSQRDNHFLQVINAYMKPKCHQADSDTVMSALAQYPFQRSKLHQICAEFFQWPPEKTDEYILPKIAERDLRRFSNFCLTSSEAGLKLPLHEIPVKCPVSEIIKCRKVQGRECYEVAWNEMDGLTTSIVPADLIESACPEKILEFEEKKAKPKKQNVQKRRPKKTEAATSMAELDLKLKNLLLDINLGGHANHNSSDLSEQVFEDTSVMDEADVNNEEDFFHSPHGLEQIGLDQNISNISNHRSDSIISKDEVIDLLSPLPQKQSHASSKCQRSNGQHIEVIDLSDSENDTSPEHEKKAKELRLFLASIRNDLH 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2563 614 CDD PIN_GEN1 2 198 - -
Sto10g2563 614 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 200 375 IPR036279 -
Sto10g2563 614 CDD H3TH_XPG-like 203 239 - -
Sto10g2563 614 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Sto10g2563 614 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Sto10g2563 614 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 129 146 IPR006084 -
Sto10g2563 614 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 150 170 IPR006084 -
Sto10g2563 614 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 205 220 IPR006084 -
Sto10g2563 614 PANTHER FLAP ENDONUCLEASE GEN HOMOLOG 1 1 507 - -
Sto10g2563 614 SMART xpgineu 130 200 IPR006086 GO:0004518
Sto10g2563 614 Pfam XPG N-terminal domain 1 96 IPR006085 GO:0004518
Sto10g2563 614 Gene3D - 201 256 - -
Sto10g2563 614 Pfam XPG I-region 133 215 IPR006086 GO:0004518
Sto10g2563 614 Gene3D - 396 464 - -
Sto10g2563 614 SMART xpgn3 1 97 IPR006085 GO:0004518
Sto10g2563 614 Gene3D - 2 199 - -
Sto10g2563 614 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 507 IPR006084 -
Sto10g2563 614 SUPERFAMILY Chromo domain-like 398 451 IPR016197 -
Sto10g2563 614 SUPERFAMILY PIN domain-like 3 215 IPR029060 -
Sto10g2563 614 MobiDBLite consensus disorder prediction 449 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2563 Sto-Chr10 35936252 35943618 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2563 1 247 Core DNA Replication Machinery Family AT5G26680 24.719 4.58e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2563 K15338 - gmx:100806919 795.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g2563 10 35936252 35943618 Sto10g2563 10 35936252 35943618 ECH