Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2552 ATGgctccgccgccgccgccgccggtgGAACAGAACGGTGAGTCCACGGCCGCCGGTGACCTTCAGAGATCTATTCCGACGCCGTTTCTCACCAAAACGTTCCAGCTCGTAGACGATCACACCATAGACGATGTGATTTCGTGGAACGAAGACGGATCCACCTTCATCGTTTGGAACCCTACCGTCTTCGCTAGAGACTTGCTTCCTAAATATTTTAAGCACAACAACTTCTCCAGTTTTGTTCGCCAACTCAACACCTATGGATTCAGGAAGGTCGTACCTGATCGGTGGGAATTCTCGAACGAGTGTTTCCGCAGAGGCGAGAAACGGCTCCTCTGCGAAATTCAGCGACGGAAGATTTCATCGCTTGCTACGTCGCCGACGGCGGCGGCAGCGGCAGCGGCAGGAGTAACAGCAACCGTAGCAGTTCCAGCACCGTCGCCGTTGTCCGCGATACCAACGGCGATGCCGATCATATCGCCGTCGAATTCAGACGAGGAACAAGTGATTTCATCCAATTCATCGTCCTCGAAAGCTCCGGCCCAGCTCATCGACGAGAACGAGAGGCTTCGGAAGGAAAACGTTCAGTTGACGAAAGAATTAACGGAGATGAGATCTCTCTGTAACAACATATTCTCCTTGATGTCGAACTACGCCAATAACCAAACGGACAGCGTTAGCAAAGACGCCAACGCCATGAAACCGCTCGATTTGATGCCGGCGAAGCGGAACTCCGGCGAGGAGGGACCGTCGTCGGCGGTGGACGAGCTAAACCCGAAGCTCTTCGGAGTGGCGATCGGAGCGAAGAGAGCAAGAGAGACCGGAGAAGCaggaggagaggaagaagaagatacaCTATTAAGCTTACATCAGCCGGGACCTGCGGAAGTGAAATCAGAGCCGTTGGATTGTCAGAACCATCGAGAGAATCAGGAGACACCTTGGCTTCATCAATGCCATAGAGCCAATCAGAGAGtgtgtaattaa 987 0.4975 MAPPPPPPVEQNGESTAAGDLQRSIPTPFLTKTFQLVDDHTIDDVISWNEDGSTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNECFRRGEKRLLCEIQRRKISSLATSPTAAAAAAAGVTATVAVPAPSPLSAIPTAMPIISPSNSDEEQVISSNSSSSKAPAQLIDENERLRKENVQLTKELTEMRSLCNNIFSLMSNYANNQTDSVSKDANAMKPLDLMPAKRNSGEEGPSSAVDELNPKLFGVAIGAKRARETGEAGGEEEEDTLLSLHQPGPAEVKSEPLDCQNHRENQETPWLHQCHRANQRVCN 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2552 328 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 313 IPR027725 -
Sto10g2552 328 Gene3D - 22 119 IPR036388 -
Sto10g2552 328 SMART hsfneu3 25 118 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto10g2552 328 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2A 9 313 - -
Sto10g2552 328 MobiDBLite consensus disorder prediction 273 287 - -
Sto10g2552 328 MobiDBLite consensus disorder prediction 1 22 - -
Sto10g2552 328 ProSitePatterns HSF-type DNA-binding domain signature. 68 92 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto10g2552 328 SUPERFAMILY "Winged helix" DNA-binding domain 26 118 IPR036390 -
Sto10g2552 328 PRINTS Heat shock factor (HSF) domain signature 29 52 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto10g2552 328 PRINTS Heat shock factor (HSF) domain signature 67 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto10g2552 328 PRINTS Heat shock factor (HSF) domain signature 80 92 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sto10g2552 328 Coils Coil 187 207 - -
Sto10g2552 328 MobiDBLite consensus disorder prediction 271 301 - -
Sto10g2552 328 Pfam HSF-type DNA-binding 29 118 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2552 Sto-Chr10 35857883 35858963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2552 7 328 HSF AT5G62020 50.147 7.06e-99 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Sto10g2552 HSF_DNA-bind 4.9e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2552 K09419 - gmx:100812267 419.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g2552 10 35857883 35858963 Sto10g2552 10 35857883 35858963 ECH