Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2546 ATGGAGGGGCATGTTGATATGGGAGTTTTGGGGGAAAATTTCGATGCTGGATTGATTGGAAGAATTAGGGACGATGGGTATGAGAGTCGCTCTGGGAGTGATAATTTTGAAGGCGTTTCACTCTCTGGTGAAGATGATCAAGATGGGGGTGATGATACACCACAGAGGAGGAAGAAGTATCATAGACACACTCCTAATCAAATCCAAGAGCTTGAATCGTTTTTTAAGGAGTGTCCTCATCCTGATGAGAAGCAAAGGTTGGAACTCAGCAAGAGGCTTGGGTTGGAGACTAAGCAAGTCAAGTTCTGGTTTCAAAATCGGCGAACCCAAATGAAGACCCAACTGGAGAGGCATGAGAATCTAATTCTGAGACAAGAGAACGACAAGCTGCGAGCGGAGAATAGCATGATGAAGGATGCCATGTCAAACCCAACATGCAACAGCTGTGGAGGCCCAGCCATTCCTGGCCAAATCTCCTTCGAAGAGCACCAACTCCGGATTGAAAATGCTCGCCTCAAGGATGAACTCAACCGTATTTGTGCCTTGGCCAACAAGTTTCTTGGAAGGCCACTATCTCCCATGGCTCTCCCACCCTCCAATTCTGCCCTTGATCTTGCCATTGGAAGGACCAACACTAACATCAACGCCAATCACAATGGGATCGCCGGCGCCCCAGGTGGGCCTAGCTTCCCAATGGGACTTGACTTGGGGATGATGATGGGAAATAATGATCAGGCCCAGCTCGAGAGATCCATGCTTATAGACCTCGCATTGTCTGCTATGGAGGAAATGATCAAGATGGCTCAGCCTGAGACTCCTCTCTGGATCAAGAGTATGGATGGTGGTGAGAAGGAGATTTTGAACCTCGAAGAGTATGCTAGGACCTTCTCTCCTTGTATCGGTCCCAAACCTGCAAGTTACATCACTGAAGCTACCAGAGACACCGGTGTAGTCATCATCAACAGTTTGTCCCTCGTCGAAACATTGATGGATGCGAATCGATGGACCGAGATGTTTCCAACCATGGTTGCTAGAGCTTTGACCCTTGATGTGATATCAAATGGCATGGGAGGAACAAGAAATGGTGCTTTGCAAGTGATGGATGCTGAAGTTCAATTGCTTTCGCCACTTGTGCCTGTTCGTCAAGTGAGGTTGCTCCGACTATGCAAGCAGCACGCAGAGGGCTTCTGGGCCGTGGTCGACGTTTCTATTGAGATAGGCCGTGACCTTTCCAATCCGCACCCGTTCGCCACGTGCCGGAGGCTTCCTTCCGGCTGCATCGTGCAGGACATGCCCAATGGTTACTCTAAGGTTACTTGGGTGGAGCATTGGCAATACGATGAGAGTGTCGTCCACCGGCTTTACCGGCCGGTGGTTAGCTCCGGCGTCGGCTTCGGCGCTTATCGATGGATCGCCACCCTTCAAAGGCAATGTGAATACTTGGCCATCATCATGTCCTCTTCCATCCCTAATGAGGATCACTCTAGTCTCAGCTTAAGCCAAGGTGGTCGGAGAAGCATGGTGAAGCTCGCACAGCGCATGAGCGACAGCTTCTACGCCGGCGTGTGCGGGTCGTCTGGCCGGCGGTGGGACAAGCTGCACGTGGGGTCTCTGGGCGACGACGTGAAGGTGATGACCAAGAAGAACGAGGACGAGCCGGGCGAGCCTCCGGGGATCGTGCTCAGCGCCGCGACCTCGGTCTGGCTGCCGGTGTCGCGGCGGAGGCTCTTTGACTTCCTCCGCAACAAGCGGAGCGAGTGGGACATCCTGTCCAACGGTGGGTCCATGCTGGAGGTGGTCCACATTGCTAAGGGACAGGAAAATGGTAACTGTGTGTCTCTCCTTCGTACTGATGGagtgaatgggaatgggaaCGAGAGCAACATGCTAATACTACAAGACGCATGGACGGACACGTGGTGCTCGGTGGTCGTCTACGCGCCAGTCGACGTGGAGTCCCTGAACGTCGTCATGAGCGGGGGCGACTCTTCCTACGTGGCGCTCCTGCCTTCCGGCTTCGCGATTCTCCCCGACGCGGGGCCCGGCTCTCctcgcggcggcggcggcgggggAAGCCTGCTGACGGTTGGGCTACAGATATTGGTGAGCAGCCTCCCAACAGGAAAGCTGACAGTGGAATCCGTAGACACAGTTAACAACCTCATCTCATGCACGCTCCAGAGGATCAAAGCCTCCATCAGTCGCATCAATGAATGA 2217 0.5223 MEGHVDMGVLGENFDAGLIGRIRDDGYESRSGSDNFEGVSLSGEDDQDGGDDTPQRRKKYHRHTPNQIQELESFFKECPHPDEKQRLELSKRLGLETKQVKFWFQNRRTQMKTQLERHENLILRQENDKLRAENSMMKDAMSNPTCNSCGGPAIPGQISFEEHQLRIENARLKDELNRICALANKFLGRPLSPMALPPSNSALDLAIGRTNTNINANHNGIAGAPGGPSFPMGLDLGMMMGNNDQAQLERSMLIDLALSAMEEMIKMAQPETPLWIKSMDGGEKEILNLEEYARTFSPCIGPKPASYITEATRDTGVVIINSLSLVETLMDANRWTEMFPTMVARALTLDVISNGMGGTRNGALQVMDAEVQLLSPLVPVRQVRLLRLCKQHAEGFWAVVDVSIEIGRDLSNPHPFATCRRLPSGCIVQDMPNGYSKVTWVEHWQYDESVVHRLYRPVVSSGVGFGAYRWIATLQRQCEYLAIIMSSSIPNEDHSSLSLSQGGRRSMVKLAQRMSDSFYAGVCGSSGRRWDKLHVGSLGDDVKVMTKKNEDEPGEPPGIVLSAATSVWLPVSRRRLFDFLRNKRSEWDILSNGGSMLEVVHIAKGQENGNCVSLLRTDGVNGNGNESNMLILQDAWTDTWCSVVVYAPVDVESLNVVMSGGDSSYVALLPSGFAILPDAGPGSPRGGGGGGSLLTVGLQILVSSLPTGKLTVESVDTVNNLISCTLQRIKASISRINE 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2546 738 SMART HOX_1 56 118 IPR001356 GO:0003677
Sto10g2546 738 CDD homeodomain 57 114 IPR001356 GO:0003677
Sto10g2546 738 SMART START_1 255 480 IPR002913 GO:0008289
Sto10g2546 738 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 6 734 IPR042160 -
Sto10g2546 738 Pfam START domain 256 479 IPR002913 GO:0008289
Sto10g2546 738 ProSiteProfiles 'Homeobox' domain profile. 54 114 IPR001356 GO:0003677
Sto10g2546 738 SUPERFAMILY Bet v1-like 510 730 - -
Sto10g2546 738 SUPERFAMILY Bet v1-like 248 479 - -
Sto10g2546 738 Pfam Homeodomain 57 112 IPR001356 GO:0003677
Sto10g2546 738 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 6 734 - -
Sto10g2546 738 MobiDBLite consensus disorder prediction 27 63 - -
Sto10g2546 738 Gene3D - 44 129 - -
Sto10g2546 738 ProSitePatterns 'Homeobox' domain signature. 89 112 IPR017970 GO:0000981|GO:0006355
Sto10g2546 738 ProSiteProfiles START domain profile. 246 483 IPR002913 GO:0008289
Sto10g2546 738 CDD START_ArGLABRA2_like 250 479 - -
Sto10g2546 738 Coils Coil 108 135 - -
Sto10g2546 738 SUPERFAMILY Homeodomain-like 40 114 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2546 Sto-Chr10 35799728 35806405 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2546 23 733 Homeobox Transcription Factor Family AT3G61150 58.266 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sto10g2546 START 2.6e-45 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2546 K09338 - gmx:100794400 1097.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g2546 10 35799728 35806405 Sto10g2546 10 35799728 35806405 ECH