Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2532 ATGAAGCCTATATTCTGTGGAAACTTTGAATATGATGCCCGGCAGTCTGAGCTGGAGCGGCTTTTTAGAAGATATGGGAAAGTTGATAGGGTGGATATGAAGTCTGGGTTTGCCTTTATATATATGGAAGATGAGAGAGATGCTGAGGATGCCATTAGAGCACTTGATCGGATAGAATTTGGTCGCAAGGGACGCAGACTACGTGTGGAATGGACAAAACATGAACGTGGCATCAGAAGGCCTGGTGGTGGTTCGAGAAGATCTTCAGGAAATTCAAGGCCATCAAAGACTTTATTTGTCATTAATTTTGATACATATAATACCAGGACTAGGGATTTGGAGAGACATTTTGAGCCATATGGCAAGATAGTCAGTGTGAGGATCAGAAGGAATTTTGCATTCGTTCAGTATGAATCAGAGGATGATGCCACCAGAGCATTGGAAGCAACAAATATGAGCAAGTTACTGGATCGTGTCATCTCCGTTGAATTTGCTGTTAAGGATGATGATGACAGGCGAAGTGGGTATAGCCCTGAAAGAAGCTATGACCGCCCACATGATAGAAGCCGTGATAGAAGGCGATCACCCAGTCCTTATCGCAGAGAGAGGGGTAGCCCTGATTATGGCCATGGCTCTAGCCcatataagagagagaaaaacagCCCTGATTATGGTCGTTTCCGCAGCCGAAGTCCCCGTCGGAATGAGAGAGCTAGTCCTGATTATAAGCGCAGAAGTCGTAGTCCACACAGAAGAGAGAGGGATGGTTCTGACCTTAAAGAGCGAGCTAGAACTGACCGTGGCAACTCTCCCTCCCATAGTCCTGATGCAAGAGAGAGGTTAAGCCCTCAAAATGGCCATGGCTCCAGCCGTAGTCCTTACTATACTGAGAGAGCTAGCCCTGAAAATGCTCATGGCTCTAGACGTAGCCCTGATGATGCTAGAGGGGATCCTAGTCCTTACAATGGCAATGGAGGTAGCCCAAATTCCATGCCTGAGCCCAAAGACAGCCCCAATTATGGTGCTCCTGAAAGCCCCATGAATGAAAGATATCGCAGCCAATCACCTGCTGCTGAAGAATGA 1083 0.4626 MKPIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMEDERDAEDAIRALDRIEFGRKGRRLRVEWTKHERGIRRPGGGSRRSSGNSRPSKTLFVINFDTYNTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDATRALEATNMSKLLDRVISVEFAVKDDDDRRSGYSPERSYDRPHDRSRDRRRSPSPYRRERGSPDYGHGSSPYKREKNSPDYGRFRSRSPRRNERASPDYKRRSRSPHRRERDGSDLKERARTDRGNSPSHSPDARERLSPQNGHGSSRSPYYTERASPENAHGSRRSPDDARGDPSPYNGNGGSPNSMPEPKDSPNYGAPESPMNERYRSQSPAAEE 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2532 360 MobiDBLite consensus disorder prediction 275 297 - -
Sto10g2532 360 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
Sto10g2532 360 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 160 IPR000504 GO:0003723
Sto10g2532 360 SUPERFAMILY RNA-binding domain, RBD 4 170 IPR035979 GO:0003676
Sto10g2532 360 MobiDBLite consensus disorder prediction 170 360 - -
Sto10g2532 360 MobiDBLite consensus disorder prediction 170 274 - -
Sto10g2532 360 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 207 - -
Sto10g2532 360 PANTHER - 4 207 - -
Sto10g2532 360 Gene3D - 1 81 IPR012677 -
Sto10g2532 360 Gene3D - 84 177 IPR012677 -
Sto10g2532 360 CDD RRM2_AtRSp31_like 97 166 - -
Sto10g2532 360 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Sto10g2532 360 CDD RRM1_AtRSp31_like 2 73 - -
Sto10g2532 360 SMART rrm1_1 97 163 IPR000504 GO:0003723
Sto10g2532 360 SMART rrm1_1 3 70 IPR000504 GO:0003723
Sto10g2532 360 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 167 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2532 Sto-Chr10 35613964 35616990 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2532 4 162 Eukaryotic Initiation Factors Gene Family AT4G34110 24.713 3.55e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2532 K12893 - gmx:100781534 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g2532 10 35613964 35616990 Sto10g2532 10 35613964 35616990 ECH