Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2527 ATGGTGAAAGAAATGTCTGACGTGTTCAGTAACAAGTGTCAACGAGGAACAAGGTTTAGGTGGCATCAGATGAACAATGTGTCGCGTATAGATGTTGACAGagcctccCAACCCATTGAGTCACCTAGACAAACGTTAACCTCCCATGATAATAGACATGAGACCCACACCACTCCAATGATGCGAACTGAGGCCGAGATTCCCAAGCCAAGTCCTGCAAATACTGAGAACTCTAATGAAGATATGAATTTTCCTATTGCGCTAAGGAAGGGGGAGGTGATGTTGGCGGCGAGTCACCCGAAGAAGCGCGCTGGGAGGAAGAAGTTCCGGGAGACTCGCCACCCGGTGTACCGGGGCGTGCGGCGGAGGAACTCCGGAAAGTGGGTGTGCGAGGTGCGTGAGCCAAACAAGAAGACGAGGATTTGGCTGGGGACGTTTCCCACGGCGGATATGGCGGCGCGGGCGCATGATGTGGCGGCGATGGCGCTCCGGGGGCGGTCGGCTTGCCTTAACTTCGCGGACTCGGCGTGGCGGTTGCCCGTCCCGGCGTCGGTCGAGGCGAAGGATATTCAGAAGGCGGCGGCCAAAGCCGCAGAGGCATTCCGACCCGGGATGGAATCGGAGACCGATGAAGTGAGGCGGGAAAGTGCGGTGGCGGCTGCCGCCGCCACCACGCCGGAGCAAAGTATATTTGTtatggatgaagaagaagagggagtgATGGGGATGCCGGAATTGCTGAAGAGCATGGTGCTGATGTCACCAACTCATTGCTTGGGAGATCAGTATGGTGGCGCTGACGTGGAAGTGGATGATGCTGAGGTGTCATTATGGAgttattcaatttaa 849 0.5359 MVKEMSDVFSNKCQRGTRFRWHQMNNVSRIDVDRASQPIESPRQTLTSHDNRHETHTTPMMRTEAEIPKPSPANTENSNEDMNFPIALRKGEVMLAASHPKKRAGRKKFRETRHPVYRGVRRRNSGKWVCEVREPNKKTRIWLGTFPTADMAARAHDVAAMALRGRSACLNFADSAWRLPVPASVEAKDIQKAAAKAAEAFRPGMESETDEVRRESAVAAAAATTPEQSIFVMDEEEEGVMGMPELLKSMVLMSPTHCLGDQYGGADVEVDDAEVSLWSYSI 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2527 282 Pfam AP2 domain 115 165 IPR001471 GO:0003700|GO:0006355
Sto10g2527 282 Gene3D AP2/ERF domain 116 174 IPR036955 GO:0003700|GO:0006355
Sto10g2527 282 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 78 282 IPR045277 GO:0003700
Sto10g2527 282 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 78 282 - -
Sto10g2527 282 SUPERFAMILY DNA-binding domain 116 175 IPR016177 GO:0003677
Sto10g2527 282 MobiDBLite consensus disorder prediction 33 58 - -
Sto10g2527 282 CDD AP2 117 175 IPR001471 GO:0003700|GO:0006355
Sto10g2527 282 ProSiteProfiles AP2/ERF domain profile. 116 173 IPR001471 GO:0003700|GO:0006355
Sto10g2527 282 PRINTS Ethylene responsive element binding protein signature 117 128 IPR001471 GO:0003700|GO:0006355
Sto10g2527 282 PRINTS Ethylene responsive element binding protein signature 139 155 IPR001471 GO:0003700|GO:0006355
Sto10g2527 282 SMART rav1_2 116 179 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2527 Sto-Chr10 35545656 35567965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2527 95 280 AP2-EREBP Transcription Factor Family AT4G25470 62.887 1.17e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sto10g2527 AP2 9.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2527 - K09286 aprc:113872706 259.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g2527 10 35545656 35567965 Sto10g2527 10 35545656 35567965 ECH