Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2521 ATGGATTTAGATGGCGGCGGCAATAAGCGCGTATTCCAGCGTCTTGGCGGGACACCGACGGATAGCAGGAGCCAGAAAGTATGTTATCATTGGCAGGCAGGCAAGTGCACTAGGCATCCGTGCCACTTTCTGCATAGTGAATTGCCTCCTTCAAACACCAACGGAATGTCTTCGAAGCGGTCCCATGGGTCTGCTGATGGTTCTGGTTTCTCGGGACCACGGAGGAGTGCGAATTTTAGTGGCGGAGCTGTAGGTGGTAATAAAATAGTTAGGAGGAATGATAAAGTTTGTAATTATTGGGTTCAGGGGAATTGTAATTATGGAGAGCGGTGTAGGTACCTTCATTCTTGGAATTTAGGTGACGGATTTTCGTTACTGACACAGCTTGAAGGGCACCAGAAGGTTATTAGTGGAATCGCCTTCCCATCTGGTTCTGATAAGCTATATACTGGTAGTAAGGATGAAACTGTACGAGTCTGGGACTGCCAATCTGGGAAGTGTATGGCTGTGGTCAATCTTGGTGGTGAAGTAGGTTGCATGATGAGTGAAGGTCCTTGGATTTTTGTTGGCATAACTAATTTTGTTAAGGCCTGGAATACTCAAAATTCATTAGAGCTTAGTCTGAGTGGTCCAGTTGGACAAGTTTATACACTGGTTGTGGGTAATGATATGCTCTTAGCTGGTACTCAGGACGGTTCTATATTGGCATGGAAGTTTAATGTAGTTGCAAACTGTTTTGAGCCAGCTGCATCCCTTAAAGGACATTCCCTTGCAGTTGTTTCTCTAGTTGTTGGAGCTAATAGGCTCTACTCTGGTTCCATGGACAATACAATAAGAGTCTGGAATCTTGAAACTTTGCAGTGTTTGCAGACACTGACAGGGCACACGTCTGTTGTGATGTCTGTTCTTTGTTGGGACCAGTTTCTCTTATCTTGTTCGTTGGATAAAACAATAAAGGTGTGGGTTGCTACAGAAAGTGGAAACCTTGAAGTGACATATACACACAATGAAGAgcatGGCATACTTACCCTTTGTGGGATGCATGATTTACAAGGCAAACCAATTCTGCTGTGCTCATGCAATGATAATACCGTGCGCCTCTATGATTTGCCATCATTTGCAGAGAGAGGCAAGATTTTCAGTAAACAAGAGGTTCGGGCAATCCAAGCAGGTCCTGGTTCCATATTTTTCACTGGTGATGGAACAGGGGAAGTAAGAGTGTGGAATTGGTCAACGGAGCCAACTTTAACTAGCAAGTAG 1260 0.4444 MDLDGGGNKRVFQRLGGTPTDSRSQKVCYHWQAGKCTRHPCHFLHSELPPSNTNGMSSKRSHGSADGSGFSGPRRSANFSGGAVGGNKIVRRNDKVCNYWVQGNCNYGERCRYLHSWNLGDGFSLLTQLEGHQKVISGIAFPSGSDKLYTGSKDETVRVWDCQSGKCMAVVNLGGEVGCMMSEGPWIFVGITNFVKAWNTQNSLELSLSGPVGQVYTLVVGNDMLLAGTQDGSILAWKFNVVANCFEPAASLKGHSLAVVSLVVGANRLYSGSMDNTIRVWNLETLQCLQTLTGHTSVVMSVLCWDQFLLSCSLDKTIKVWVATESGNLEVTYTHNEEHGILTLCGMHDLQGKPILLCSCNDNTVRLYDLPSFAERGKIFSKQEVRAIQAGPGSIFFTGDGTGEVRVWNWSTEPTLTSK 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2521 419 MobiDBLite consensus disorder prediction 52 83 - -
Sto10g2521 419 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 416 - -
Sto10g2521 419 SMART WD40_4 285 322 IPR001680 GO:0005515
Sto10g2521 419 SMART WD40_4 372 409 IPR001680 GO:0005515
Sto10g2521 419 SMART WD40_4 122 161 IPR001680 GO:0005515
Sto10g2521 419 SMART WD40_4 201 238 IPR001680 GO:0005515
Sto10g2521 419 SMART WD40_4 326 369 IPR001680 GO:0005515
Sto10g2521 419 SMART WD40_4 245 282 IPR001680 GO:0005515
Sto10g2521 419 Gene3D - 248 419 IPR015943 GO:0005515
Sto10g2521 419 PRINTS G protein beta WD-40 repeat signature 148 162 IPR020472 -
Sto10g2521 419 PRINTS G protein beta WD-40 repeat signature 269 283 IPR020472 -
Sto10g2521 419 PRINTS G protein beta WD-40 repeat signature 309 323 IPR020472 -
Sto10g2521 419 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 129 161 - -
Sto10g2521 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 252 291 IPR001680 GO:0005515
Sto10g2521 419 PANTHER - 1 416 IPR044715 -
Sto10g2521 419 MobiDBLite consensus disorder prediction 1 23 - -
Sto10g2521 419 ProSitePatterns Trp-Asp (WD) repeats signature. 269 283 IPR019775 -
Sto10g2521 419 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 252 285 - -
Sto10g2521 419 Pfam WD domain, G-beta repeat 287 321 IPR001680 GO:0005515
Sto10g2521 419 Pfam WD domain, G-beta repeat 125 161 IPR001680 GO:0005515
Sto10g2521 419 Pfam WD domain, G-beta repeat 249 282 IPR001680 GO:0005515
Sto10g2521 419 ProSiteProfiles Zinc finger C3H1-type profile. 22 48 IPR000571 GO:0046872
Sto10g2521 419 ProSiteProfiles Zinc finger C3H1-type profile. 91 118 IPR000571 GO:0046872
Sto10g2521 419 SMART c3hfinal6 93 117 IPR000571 GO:0046872
Sto10g2521 419 SMART c3hfinal6 22 47 IPR000571 GO:0046872
Sto10g2521 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 129 170 IPR001680 GO:0005515
Sto10g2521 419 Pfam Zinc finger domain 97 115 - -
Sto10g2521 419 Gene3D - 83 116 - -
Sto10g2521 419 SUPERFAMILY WD40 repeat-like 117 413 IPR036322 GO:0005515
Sto10g2521 419 MobiDBLite consensus disorder prediction 52 75 - -
Sto10g2521 419 SUPERFAMILY CCCH zinc finger 92 116 IPR036855 GO:0046872
Sto10g2521 419 Gene3D - 117 247 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2521 Sto-Chr10 35495132 35501395 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2521 123 332 Acyl Lipid Metabolism Gene Families AT3G18860 25.664 2.29e-09 57.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sto10g2521 WD40 2e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2521 - - gmx:100792089 695.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g2521 10 35495132 35501395 Sto10g2521 10 35495132 35501395 ECH