Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2512 ATGGTGAGGGGGAAGATTGAgatgaagaagatagagaatgaAACGAGCCGTCAAGTGACGTTTTCAAAGCGTAGGAATGGAGTTATGAAGAAAGCCTATGAACTTTCTGTTCTTTGTGAAGCTCAAGTTGCTGTTATCATCTTTTCACAAAGAGGCAGACTCTATGAGTTCTCTTCTAATTCTGACATCACAAAGATTTTGGAGCGATACCGTGAAACTGCCATCAAAGATGCTCACACCAATGAATTTGACGAGGAACAGTATAGGCAGCAATTGAAGTTTGAATCTGCAGCTATGGCAAAGGAGATTGAGCTTCTCGAACTTTCTAAAAGAAAATTACTGGGAAAAGAGTTGAGTTGTTCATATGATGAACTCCAAGCAGTGGAGAAGCAGCTGGAGAAAAGTATACATAACGTTAGGCTCCGGAAGGCCCAGCTATTGAAGGAGCAAATTGAGCAACTACAAAACAAGTTTGGTAGAAAATCATTAGAGCAATGGGCTAAACACAAAGAAGCTGAAGCATTCTTCAGTCCAAGTACTCACAAGACTTCACACGTAGAAACTGAATTATTTATTGGACTCCCACATAATTAG 594 0.3889 MVRGKIEMKKIENETSRQVTFSKRRNGVMKKAYELSVLCEAQVAVIIFSQRGRLYEFSSNSDITKILERYRETAIKDAHTNEFDEEQYRQQLKFESAAMAKEIELLELSKRKLLGKELSCSYDELQAVEKQLEKSIHNVRLRKAQLLKEQIEQLQNKFGRKSLEQWAKHKEAEAFFSPSTHKTSHVETELFIGLPHN 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2512 197 CDD MADS_MEF2_like 3 73 IPR033896 GO:0000977|GO:0045944
Sto10g2512 197 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sto10g2512 197 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sto10g2512 197 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sto10g2512 197 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sto10g2512 197 SUPERFAMILY SRF-like 3 90 IPR036879 GO:0003677|GO:0046983
Sto10g2512 197 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sto10g2512 197 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Sto10g2512 197 ProSiteProfiles K-box domain profile. 89 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto10g2512 197 PANTHER MADS BOX PROTEIN 1 194 - -
Sto10g2512 197 Coils Coil 122 164 - -
Sto10g2512 197 PANTHER MADS-BOX PROTEIN SOC1 1 194 - -
Sto10g2512 197 Pfam K-box region 85 162 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sto10g2512 197 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sto10g2512 197 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2512 Sto-Chr10 35387729 35397560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2512 1 147 MADS-box Gene Family AT5G62165 63.514 4.24e-57 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sto10g2512 K-box 1.9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2512 - - gmx:100818935 212.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g2512 10 35387729 35397560 Sto10g2512 10 35387729 35397560 ECH