Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2501 ATGGTGATCTGCTCCCTCTTCAATCGCAACATCGTCTCTGGTCGTGTGTGTAACCTAATCGAAAGCGAGTTTGCCTTGCGTCGCTCTCGGTCAATGGAGATTTCGTTTCTCCGCTCAAGGTCCAAATTTTTCGGAGGCGACAGAGATTTCGATCCTGATATTACAGAGGAATCTATGGCTCCAAATAGATCCAAATCAACGAGTTCAATGTTCAAGCCtattccttcttcttcttcttccgaTCCTCTTTCTCTCCCAATCCAAACAATCCCAGAAGATCAGATCCTCCATGATCATCAAATTGAAAgccattttcttaattttaacaCTGAAAATTTAGTGACTACTACTCCTTCAGAAGGAAAGGGCAAGAAGCAGCAAAACCAATTTCAAAACAAGAGGTCAATGCATAGGGAGACAGAAAGACAAAGAAGACAAGAAATGGCCACCCTTTTTGCTTCCCTCAGATCTCTTCTCCCTCTTGAATATATTAagGGGAAGCGATCAATATCTGATCACATGCATGAGGCAGTGaattatatcaaatattcaGAGAATAAGGTGAAGAATTTGAAGGCAAAGAGGGATGAATTAGAGAAATTGTGTAATTTGAGTTCAATTTCTGTGATTGTTCATCCTTTCAAGGGTGGAGCTGAGATTATGTGTAGTTATAGCTTCAACAACTATAGGATTACACAGTCACAAATTCTGAGTTTGATGCTTCAACAAGGGCTTAATATGGTAAGCTATAATTTCACCAACACGGACGAGAGGTCCATACTGACAATCCGATTCGAGGATTGTGATATGGCTGAGACTGAGAATGACTACTCTGAACTGCAAAGGAAGCTTACTGAAGCAATCTTATCTACAAATAAATGA 882 0.381 MVICSLFNRNIVSGRVCNLIESEFALRRSRSMEISFLRSRSKFFGGDRDFDPDITEESMAPNRSKSTSSMFKPIPSSSSSDPLSLPIQTIPEDQILHDHQIESHFLNFNTENLVTTTPSEGKGKKQQNQFQNKRSMHRETERQRRQEMATLFASLRSLLPLEYIKGKRSISDHMHEAVNYIKYSENKVKNLKAKRDELEKLCNLSSISVIVHPFKGGAEIMCSYSFNNYRITQSQILSLMLQQGLNMVSYNFTNTDERSILTIRFEDCDMAETENDYSELQRKLTEAILSTNK 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2501 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 132 205 IPR036638 GO:0046983
Sto10g2501 293 MobiDBLite consensus disorder prediction 59 84 - -
Sto10g2501 293 SMART finulus 138 190 IPR011598 GO:0046983
Sto10g2501 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 132 184 IPR011598 GO:0046983
Sto10g2501 293 MobiDBLite consensus disorder prediction 48 84 - -
Sto10g2501 293 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 131 290 IPR015660 GO:0003700|GO:0006357
Sto10g2501 293 Coils Coil 263 290 - -
Sto10g2501 293 Gene3D - 123 208 IPR036638 GO:0046983
Sto10g2501 293 MobiDBLite consensus disorder prediction 114 145 - -
Sto10g2501 293 Pfam Helix-loop-helix DNA-binding domain 133 183 IPR011598 GO:0046983
Sto10g2501 293 PANTHER TRANSCRIPTION FACTOR 131 290 - -
Sto10g2501 293 MobiDBLite consensus disorder prediction 114 130 - -
Sto10g2501 293 Coils Coil 181 201 - -
Sto10g2501 293 CDD bHLH_AtORG2_like 133 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2501 Sto-Chr10 35289931 35293330 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2501 133 284 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 41.765 7.59e-31 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto10g2501 HLH 2.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2501 - - gmx:100803786 195.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g2501 10 35289931 35293330 Sto10g2501 10 35289931 35293330 ECH