Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2500 ATGTTTCCTAATTTCCACCTAAACAATAATGATTCTAATTTATATGATCTCCCACAAGAAGATATTGGAGATCAAGAAGATCCGATTCTGTTCCAAGATTCACTTCCTCATCATAATTCTGATCTCACTACTTTCACAATGGAAAGAGGCAAGCAAAAGcaaaagcagaagcagaagcatcataatcatattaataataatattattgatgaaTTAGCAAGTGTTAGTGATGAtggtgagaagaagaagatgattcGTAGAGAAACTGAAAGGCAAAGAAGGATGCAAATGACAAATCTGTGTCAATCACTCCGATCCTTGCTCCCTTCTCAGCTCATCAAGGGAAAGCGTTCAGTGTCTGATCACTTAGGGGAGGCTGCAAGTTATATAAAGGATTTGAAGGAGAAAACTCATGAACTTCAAATTAAGAGAGACAAGTTAAAAAATGAGGTTAATAGTTCAAGTTTGGTTGATTCTGTAATAATGGAAAGTAGTTCTTCAGCGAATTCGAATATGGCCAAGTGCGTGAACATTTCGCCTTTTCCGGGCGGCGTCGAAATCTCGATCGACAGCGGCTTGGAGGAGAGTAGTTTTCCCCTTTCAATTTTGCTGGAAATTTTGATTCAAGAAGGACATAATGTTGTGAGCTGTGTTTCCACCCAAGTGAATGGGAGGCTATATCACTCTATTAAGGCTGAGGTATActaa 708 0.3503 MFPNFHLNNNDSNLYDLPQEDIGDQEDPILFQDSLPHHNSDLTTFTMERGKQKQKQKQKHHNHINNNIIDELASVSDDGEKKKMIRRETERQRRMQMTNLCQSLRSLLPSQLIKGKRSVSDHLGEAASYIKDLKEKTHELQIKRDKLKNEVNSSSLVDSVIMESSSSANSNMAKCVNISPFPGGVEISIDSGLEESSFPLSILLEILIQEGHNVVSCVSTQVNGRLYHSIKAEVY 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2500 235 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 33 234 IPR015660 GO:0003700|GO:0006357
Sto10g2500 235 CDD bHLH_AtORG2_like 82 152 - -
Sto10g2500 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 79 151 IPR036638 GO:0046983
Sto10g2500 235 Coils Coil 130 150 - -
Sto10g2500 235 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 33 234 - -
Sto10g2500 235 Gene3D - 73 157 IPR036638 GO:0046983
Sto10g2500 235 Pfam Helix-loop-helix DNA-binding domain 83 133 IPR011598 GO:0046983
Sto10g2500 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 81 133 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2500 Sto-Chr10 35279231 35280557 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2500 77 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G62975 39.884 2.05e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto10g2500 HLH 3.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2500 - - ccaj:109790384 171.785
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g2500 10 35279231 35280557 Sto10g2500 10 35279231 35280557 ECH