Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2498 ATGTTTCCTTTACAACCaggcaataataataatagtgagaTGGTCATAGAATTTTCTAGAAGCCCCCATCATGACAACCTCAGAATCTCTCCTCAAGatctcaataataataataatattcttcatcatcatcctaCTCCTATTCCTCCTcaatctcatcatcatcatcctcttcCTACTTCTAAGAAGAGCAAGAAGATCGTTCATAGAGAGATTGAGAGGCAAAGAAGACAAGAAATGGCTTCCCTTTATTCCTCCCTTAGATCTCTTCTCCCTCTTGAGTTCATCAAGggGAAGCGATCGATATCGGATCACATGAACGAGGCAGTGAACTACATAAAGCATCTTGAGAAGAATATCAAAGAGCTGAATGCAAAGAGAGATAAACTGAAGAAATTCTTGGTCTCAAATGACAATAATTCTTCAAATTATTATTCAGAAACCCATATTATTAAGGATGAAgatgagaaggaagaagaggaggagggtaCATCTAGAAATACCAGCTTCTTCAGTGTCCATgagattaataataatgaaggtGTGGGAATTGAAGTCACTTGTGGCTTCAGAGATCACAAAAGGCTTCCTCTTTCAAAATTGCTTCAAGTAGTGCTTGAGGAAGATGAAGGACTTGAAGTTGTCAATTGTGTTTCCACTCAAGTCAATGGAAGATTTATTCTTAGTGTTCAGTGTGAgGTTAACAACTCCGACCTCGTAGATCTACCTGCGCTGAGACGGAAAATTGTCGATTTAGTTCCATCATTTAGATGTTCTGATTATGATCATTAA 792 0.3194 MFPLQPGNNNNSEMVIEFSRSPHHDNLRISPQDLNNNNNILHHHPTPIPPQSHHHHPLPTSKKSKKIVHREIERQRRQEMASLYSSLRSLLPLEFIKGKRSISDHMNEAVNYIKHLEKNIKELNAKRDKLKKFLVSNDNNSSNYYSETHIIKDEDEKEEEEEGTSRNTSFFSVHEINNNEGVGIEVTCGFRDHKRLPLSKLLQVVLEEDEGLEVVNCVSTQVNGRFILSVQCEVNNSDLVDLPALRRKIVDLVPSFRCSDYDH 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2498 263 MobiDBLite consensus disorder prediction 24 66 - -
Sto10g2498 263 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 37 255 IPR015660 GO:0003700|GO:0006357
Sto10g2498 263 PANTHER TRANSCRIPTION FACTOR BHLH120-RELATED 37 255 - -
Sto10g2498 263 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 64 116 IPR011598 GO:0046983
Sto10g2498 263 Pfam Helix-loop-helix DNA-binding domain 65 117 IPR011598 GO:0046983
Sto10g2498 263 MobiDBLite consensus disorder prediction 28 45 - -
Sto10g2498 263 Gene3D - 55 144 IPR036638 GO:0046983
Sto10g2498 263 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 62 131 IPR036638 GO:0046983
Sto10g2498 263 Coils Coil 106 133 - -
Sto10g2498 263 MobiDBLite consensus disorder prediction 145 167 - -
Sto10g2498 263 SMART finulus 70 122 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2498 Sto-Chr10 35255248 35256247 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2498 66 252 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 43.386 1.19e-36 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sto10g2498 HLH 5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2498 - - gmx:100780888 204.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g2498 10 35255248 35256247 Sto10g2498 10 35255248 35256247 ECH