Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2448 ATGTCAGAATCCGACGACGAAAATCCCGACCTTCCTCCCAAGTCAAAGCCCGTTCCCGACGAGCCTGGCTCCGTCATGGATTTCGATCTCGACCTGGAAAGTTCTTGGCCGTTAGATCAGATTTCCTTCGTCTCCAACCCTATGTCTCCTTTTCTTATCCCTGCTTCCTCCGAGCAGCCTTCCTCTCCTCTCTGGGTTTTCTCTGACGCAGATGATGATAGGCAAGCTAGACTTGCCGCTTCTGCCTTCTCCGATTGTCACCGATTTTTCTCCTGCAACTCAAATTCAGTAGCTGAAAAACCAGTGGAAAATGAGAACAAAAAACTTCCACCGCCCTTTGTGCTTCTGCCACCATTAGAAAATCCAGATGGCTATTGTCTAATTAAGGAAAGGATGACACAAGCACTACGGTACTTCAAAGAGTTGGCAGAACAGAATGTTCTGGCTCAGGTTTGGGCACCTGTGAAAGTTGGGAACCAGTATGTGCTTACAACATCAGGGCAACCTTTTGTTCTCGATCCACACAGTAATGGACTCCATCAGTATAGAACAGTCTCCCTGATGTACATGTTTCCTGTGGACGGGGAGAATGATGGAATCCAGGGACTTCCTGGTCGTGTTTTTCAGCATAAGTTACCTGAATGGAGTCCCAATGTTCAATATTATTCTTGTAAAGAGTATCCTCGCCGGAATCATGCTGAACATTACAATGTTCGTGGAACCTTGGCTTTGCCTGTGTTTGAACCTTCAGGACAGTCATGTGTTGGTGTACTGGAGTTGATAATGACTTCACAGAAGATTAACTATGCTCCTGAGGTTGATAAAATCTGCAAAGCTCTCGAGTCACCTGTTGTCAGTTATCCTGCAGGCAGTAAATCTGAAGAGTTCAGAAATTTTGGAACACCCTTACACTCAGATATAACTTGGCAATGCTTTCAGATTTGTAATGAAAGCCGCCAGAATGCATTAGCAGAGATTTTGGAGATATTGACAGTGGTGTGTGAAACTCATAAGTTACCTCTGGCCCAAACATGGGTTCCCTGTAGGCATCGGAGTGTTCTTGCCTATGGTGGTGGCCTGAAGAAGATCTGCTCTAGCTTTGATGGTAGTTGCATGGGGCAAGTTTGCATGTCTACTACTGATGTAGCGTTCTATGTCATAGATGCTCATATGTGGGGTTTCCGTGAGGCATGTGTTGAGCATCACTTACAACAAGGTCAAGGAGTTGCTGGGAAGGCATTTTTGTCTGGTAATATGTGCTTCTGTGGGAACATTACCCAGTTCTGCAAAACTGAGTACCCCTTAGTGCATTACGCTCTCATGTTTGGGTTAACCAGCTCTTTTGCCATCTGTTTACAAAGTTCTCATACTGGAACTGATGATTACATATTAGAGTTTTTTCTTCCTCCTAGAATCACAAACTTCAATGAACAAAAGACTTTGTTGGGATCTATGTTAGCAACAATGAAGCAGCATTTCCATAGTCTTAAGATTGCAGCTGGTCTTGATCTCGTGGAGGAAGGTTCAATTGAAATTGTTGAAGCTACAGAGGAAAGAGTTTGTTCAAGGATTGAATCTATTTCAATTACCCAACCTACTAAATCGCCACCTGGACCTGAGGCCTCACCAAATACGGGGGAGTTGGTGCCACTGGATCCATCAGAGCCACAAATGATAATGTACTATGATGAATTAAATGTTGGAGGCGGTCTTGGTGAAAATACAGGTGGAAGCTTTGATCAGGTCTCTTCCTTGGAGACTAAAAACATAAAGAAACCCTCAGAGAGGAAACGTGGAAAAACTGAGAAATCAATTAGTCTTGAAGTCTTGCAACGTTATTTTGCTGGGAGTCTTAAAGATGCTGCAAAGAGCCTTGGTGTTTGCCCTACTACAATGAAGCGTATCTGTAGGCAGCATGGGATATCTCGATGGCCATCTCGAAAGATCAACAAGGTTAACCGTTCCTTGTCCAAGCTCAAGCGGGTTATAGAGTCTGTCCAGGGTGCTGAAGGAGCTTTTAGTTTGAACTCTCTCGGCACAAATCCGCTTCCCATGGGTGTTGGTTCCATTCCTGAGCCTTGTACTTCAAACAAGTTCATCCCACATGCCACATTAGGCACTCGATTGTCAGAGCCACACATGAAAGAGAATGAGCTGGATTCCTCCAAAGTCTCAGAAACAAACGGACAGGCTGGGGTGGAACATCAATTGCTTGGAGGAAGGGTACAAAGTCCTGAGAAAAGTGGGTCCAGTCAAGAGTTTGGTAAAAGACGGAAAGGATCGAGAACGCGGAGTGGCTCAAGTGAAGATAGTGCTACTAACCCTACTTCTCACGGCTCTTGCCACGGTAGTCCGCCAAATGAAAGTTCACCTGCAAAAGATATATTTATTACACCCAACAACGAGCAATCTGTTGCAGTTGGAGGATCGCCGGAGTTGACTCTGCAGCCAACTAGTAAACTGAACAGTCCACCATCATACCCCAGAACCGATCATGTGGCTGCAGAACTACAAGAGCCATTTGGAGGAATGCTAATAGAGGATGCTGGTAGTTCCAAAGACTTGAGAAATTTGTGTCCTTCAGCAGCAGATGCCCATTTGGAGGATCTGGTACAAGAACCTTGTGGTGGGGCTAATCTGCGATGTCCCGACTTGGGTCCCAAGCAATGCACCGATACACTCTTCAACACGATGACACCTTTCGCAGCTCGGAGAGAAATGAAGGGTGTGACTATAAAAGCAACATACAGAGAAGATATTATCCGGTTTCGGATCTCCTTTTCCTCTGGCATTGTGGAACTGAAAGAAGAAGTTGCCAAAAGACTGAAACTAGAGGTGGGTACTTTTGATATCAAGTACCTGGATGATGATCATGAATGGGTTTTGATAGCCTGTGATGCAGACCTTCAGGAGTGCATGGATGTTTCCAGATCATCAGGTGGCAACATAATAAGGCTTTTGATTCATGACATAGCGTCCAATCTAGGAAGCTCCTGTGAAAGCTCAGGGGAGTAA 3015 0.4504 MSESDDENPDLPPKSKPVPDEPGSVMDFDLDLESSWPLDQISFVSNPMSPFLIPASSEQPSSPLWVFSDADDDRQARLAASAFSDCHRFFSCNSNSVAEKPVENENKKLPPPFVLLPPLENPDGYCLIKERMTQALRYFKELAEQNVLAQVWAPVKVGNQYVLTTSGQPFVLDPHSNGLHQYRTVSLMYMFPVDGENDGIQGLPGRVFQHKLPEWSPNVQYYSCKEYPRRNHAEHYNVRGTLALPVFEPSGQSCVGVLELIMTSQKINYAPEVDKICKALESPVVSYPAGSKSEEFRNFGTPLHSDITWQCFQICNESRQNALAEILEILTVVCETHKLPLAQTWVPCRHRSVLAYGGGLKKICSSFDGSCMGQVCMSTTDVAFYVIDAHMWGFREACVEHHLQQGQGVAGKAFLSGNMCFCGNITQFCKTEYPLVHYALMFGLTSSFAICLQSSHTGTDDYILEFFLPPRITNFNEQKTLLGSMLATMKQHFHSLKIAAGLDLVEEGSIEIVEATEERVCSRIESISITQPTKSPPGPEASPNTGELVPLDPSEPQMIMYYDELNVGGGLGENTGGSFDQVSSLETKNIKKPSERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFSLNSLGTNPLPMGVGSIPEPCTSNKFIPHATLGTRLSEPHMKENELDSSKVSETNGQAGVEHQLLGGRVQSPEKSGSSQEFGKRRKGSRTRSGSSEDSATNPTSHGSCHGSPPNESSPAKDIFITPNNEQSVAVGGSPELTLQPTSKLNSPPSYPRTDHVAAELQEPFGGMLIEDAGSSKDLRNLCPSAADAHLEDLVQEPCGGANLRCPDLGPKQCTDTLFNTMTPFAARREMKGVTIKATYREDIIRFRISFSSGIVELKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECMDVSRSSGGNIIRLLIHDIASNLGSSCESSGE 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2448 1004 Pfam PB1 domain 910 990 IPR000270 GO:0005515
Sto10g2448 1004 ProSiteProfiles PB1 domain profile. 909 991 IPR000270 GO:0005515
Sto10g2448 1004 SUPERFAMILY CAD & PB1 domains 908 994 - -
Sto10g2448 1004 SMART PB1_new 909 991 IPR000270 GO:0005515
Sto10g2448 1004 MobiDBLite consensus disorder prediction 526 550 - -
Sto10g2448 1004 MobiDBLite consensus disorder prediction 1 28 - -
Sto10g2448 1004 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 3 1003 - -
Sto10g2448 1004 MobiDBLite consensus disorder prediction 705 829 - -
Sto10g2448 1004 Gene3D - 907 990 - -
Sto10g2448 1004 MobiDBLite consensus disorder prediction 751 765 - -
Sto10g2448 1004 MobiDBLite consensus disorder prediction 766 826 - -
Sto10g2448 1004 Pfam RWP-RK domain 604 652 IPR003035 -
Sto10g2448 1004 PANTHER PROTEIN NLP8 3 1003 IPR045012 GO:0003700
Sto10g2448 1004 CDD PB1_NLP 910 990 IPR034891 -
Sto10g2448 1004 ProSiteProfiles RWP-RK domain profile. 591 672 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2448 Sto-Chr10 34714679 34719012 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2448 262 1004 NLP Transcription Factor Family AT4G24020 52.730 0.0 673
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Sto10g2448 PB1 8.8e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2448 - - gmx:100786118 1437.17