Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto10g2446 ATGAAATTGAACATAGACGCATCAGTGAAGACTTCGGGTGAAGGGGCTTTGGGAGGAGTAATACGAGACAGTGAAGGCATCATTCATGGAGTCTTTATGGCATCAACCCCAGCGTTGAAGGATGTGACTCTTTTAGAAGCTTTGGCAGTTAAAAAAGGAGTGGAGATGGCACGTAGATTGGGAGTGGAAGAATTAGAGGTGGAAAGTGACTCAAAGCTTGTCATTGATATGCTAAACTCCAATTGTGTTCACAGGTCCTTGCTAAGCTCGATCTGCAACACTATATCTGATGCTTGTGTAGGCTTTAGCTATGGAATGGCTCCTAAACAGCCAAGTACGGGTCTGTTTGTCGGGTTGAACAAGGGTCATGTTGTGACCAAGAAGGAATTGGCTCCACGCCCATCAGATCGCAAGGGGAAAACAAGCAAGCGCGTGCACTTTGTACGATCGTTGATCCGTGAAGTTGCAGGGTTTGCTCCATATGAGAAACGTATAACTGAGCTTCTCAAGGTAGGTAAAGACAAAAGAGCTTTGAAAGTGGCAAAGAGAAAGCTGGGTACTCACAAGAGGGCTAAGAAGAAGCGTGAGGAGATGTCCAACGTTCTCCGAAAGATGAGGGCTGGTGGAGgtggagagaagaagaaagcttAG 651 0.4485 MKLNIDASVKTSGEGALGGVIRDSEGIIHGVFMASTPALKDVTLLEALAVKKGVEMARRLGVEELEVESDSKLVIDMLNSNCVHRSLLSSICNTISDACVGFSYGMAPKQPSTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSNVLRKMRAGGGGEKKKA 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto10g2446 216 PANTHER 60S RIBOSOMAL PROTEIN L36 83 215 IPR000509 GO:0003735|GO:0005840|GO:0006412
Sto10g2446 216 SUPERFAMILY Ribonuclease H-like 2 80 IPR012337 -
Sto10g2446 216 CDD RNase_H_like 3 102 IPR044730 -
Sto10g2446 216 MobiDBLite consensus disorder prediction 192 216 - -
Sto10g2446 216 PANTHER 60S RIBOSOMAL PROTEIN L36 83 215 - -
Sto10g2446 216 MobiDBLite consensus disorder prediction 183 216 - -
Sto10g2446 216 Gene3D - 2 104 IPR036397 GO:0003676
Sto10g2446 216 Pfam Reverse transcriptase-like 4 98 IPR002156 GO:0003676|GO:0004523
Sto10g2446 216 ProSitePatterns Ribosomal protein L36e signature. 160 170 IPR000509 GO:0003735|GO:0005840|GO:0006412
Sto10g2446 216 Pfam Ribosomal protein L36e 113 206 IPR000509 GO:0003735|GO:0005840|GO:0006412
Sto10g2446 216 Gene3D 60S ribosomal protein L36 105 210 IPR038097 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto10g2446 Sto-Chr10 34693081 34699134 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sto10g2446 106 215 Cytoplasmic Ribosomal Protein Gene Family AT3G53740 82.143 1.15e-57 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto10g2446 K02920 - mnt:21389936 217.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto10g2446 10 34693081 34699134 Sto10g2446 10 34693081 34699134 ECH