LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto10g2398	ATGGCTCCACAGGGAGCACATCTCGGGTTGCCTCAGTTGTCGGTGGTTCACCCTCCTCGTCATCTTCAATCTGTAACACCATGTACTGTCGATTTGGGCATTTGTGCGACCAAGAATACTGAGCATCACAGgcatgatcaatatgaatatcaacttaTTGAAAGGATTggctcaaataaaattaatgccGTAATTGTGGAGTATTGGCCTAAAGGTGAAGTAAATTGGGATGGAGAGGCACTCAAAAGGatgaaaaatcttaaaattctTATCTTTAAGAGGATAAGATTTTCAGAAGTTCCTAAATATCTCCCAAATAGTTTAAGAGTGTTGTATTGGTGGGGATATCCTGCATCATGTTTACCGGTTGATTTTCATCCCAGAAATCTTGTTGAACTTGATTTGCCAAATAGTTGCTTACAGTCAATAATTATGGGACAAGCAAagAGGTTCGAGAATTTAAGTGTTCTGAATCTTTCAGAGTGCTCATTTATAACACAAATATCTGACATTTCTGGCATTCCAAACTTAACCGAATTGTGTCTTAAAAAttgtgaaaatttaattaaaattgatgatTCAGTTGGCTATCTTAGGAAACTTCAACGATTGGATGCTTATGATTGTGAAAATCTTAGGCATTTTCCACGTTGCTTAAAGTTGCCAACTCTTGAAGATCTTTCACTTACAGGTTGTTCAAGTCTTCGGAAATTTCCAGAAATACAAGAAAAAATGGAGTGTATTACAAGCCTTGATTTGAGTCGTACGAATTTAGGATTGCCATTTTCAATCCGTAATCTTACAGCACTTGAGGAAATAATAATGGAGGACTATGGAAGAGGACTTCACTTGTCAAGTAGTATTTCTCTGTTGCCAGAACCAAAAGATACAAATATTGAGGGATGCCAAGCGCAGGAATGCCCAGAAATGAGCTCCATATTGTTTCCAAATATGGAGGAAATTGTCCTCAACAGGTGTAATATATCAGATGGATTTCTTCCAATATGCCTTACTTGGTTTGTCAATGTGAAGCATTTAGATCTACGTCGTAGTAATTTCATGATTTTGCCCGCATGCATCAAAGAATGCCTCTACTTGAAGTCACTTGATCTATCTGATTGCATGCATCTGAGAGAAGTTAGAGGGATTCCACCAAATATAgaacaattatatgcaatgaATTGCATATCATTGAATTCAGAGTCAAGAAGTTTGTTAATGAGTCAGGAATTACATGATACTGGAAGCAAAAAATTTTGGGTGTCAGGATCAACAATGCCAAGATGGGTTAGCCACCATACCCTTTCCCTTTGGTTCCGCGACCAAATTCCAACAATATCATTTTGTTGTGTTCTACGTAAACATCTTCATCACCATTCGATCTTTGATAAATTACTTATCGATGTAGTCATCAATGGtgacaaaataaaaatgtgcgATGATTTCTTATTCTATCCGCATAGTAACATGTTGGTAGAAGATGTTGTAGTACTTGTCCGCATAATATGCTGTGGAGACGACAAAGTATCTTTAGCAAGTGAGTGGAACCATGTGGAGGTTAAAGCAAAAACAATATATGGTAGTCACTATGCCTCCAAGAAAGAGACTTGTGTGGAAGAGGTGGGAATTTATGTAAAGGAGCTAAAACATAGAAGGGAGGATATCCAATTCATCAATcctcataaaagaaaaaaattatttcatgatTTCAATTTGGGTTCAAGTTTCATGGCATCAAGGAGGACACACGACATCACTAGTAACAAAGACACATATGCCAATTCACAAGAAGGTGTTGGTGATGGTGCACCTATTGAAAGCTTAAAGTTGACATGTAAAAGGGATGGACAGTTCACTTCTACAAGTGAGTTAAAATATGAGATTGCTAAAGTTGCATATCAAGGCAGGCTTGTGGATTGCGAAGGAGCTGAGAGATTTATACAACTCATGCAACGTCATAACCACAATACAGATCAATCTGATTTGCATGCtcggtttcttcttcttcaagtcATAAAAGACTCACTTGCTCATTGCCACGAAAAAACAAATGAAGAAGATGCAGATTTTAATTGTAAATTTCATGTGCTATTTATCAAAGCCCTGCCGCTATTGAATAAATGGCTTCAAGACATCCTGAAAggaaaatttcataatatagAAAATGATGAGCTTGTTAAGCGTTTTTTGTCTGCTTCACTTGAGGCAATGTATAAAATGGTGCCTGTGAGCCTCTATCAACTGCAATCTTTTGGGGTAGTAAAGTCTGTGAAGCTTTTACTTAAACACAAAAGTCCACACATCTGGTTGAAAGCAGAAAGTCTAATTAACCGTTGGAAGTTTCATTTGGATGCAGAAGAAGAGAATTCTCTTGCTTCTTTGTTAGAGGAAGATCCCGAGCTAAGCAAAACTGAAATTGGAGGAGAAAAATTGAAGGATGATGCAAATCACGCATCATCTTCATCAATGTCAAATGCCATTGTTAGTAGAGTAGTGCATGTTGGTGAAAGAGCTATTGATTCATCAAATTCCCAATCAAAGCAAGATGAAGCAGTGACAAATGAAATCGACATATTGTTGGAAAAATGTATCTTCAGGAGGGACAATAGTGTCGTCTATAAAGCCGAGCTTGTTCTTAGTCTTCAAGGCAATTCGAACAGCTCTGCTCCAGACAAGATAATTGCTCAGAGTAAGCAAATTGATCACAATCTGAGCTCCAGAATTATCGGAAGGATGGATGTAGTAAGGATATCTCCTCCGATAACGATTGACCGCCGTCTCAGAAGAACCTCCAGTCTTCGAACTGCGATCACCAGAAGTCTCTGA	2826	0.3592	MAPQGAHLGLPQLSVVHPPRHLQSVTPCTVDLGICATKNTEHHRHDQYEYQLIERIGSNKINAVIVEYWPKGEVNWDGEALKRMKNLKILIFKRIRFSEVPKYLPNSLRVLYWWGYPASCLPVDFHPRNLVELDLPNSCLQSIIMGQAKRFENLSVLNLSECSFITQISDISGIPNLTELCLKNCENLIKIDDSVGYLRKLQRLDAYDCENLRHFPRCLKLPTLEDLSLTGCSSLRKFPEIQEKMECITSLDLSRTNLGLPFSIRNLTALEEIIMEDYGRGLHLSSSISLLPEPKDTNIEGCQAQECPEMSSILFPNMEEIVLNRCNISDGFLPICLTWFVNVKHLDLRRSNFMILPACIKECLYLKSLDLSDCMHLREVRGIPPNIEQLYAMNCISLNSESRSLLMSQELHDTGSKKFWVSGSTMPRWVSHHTLSLWFRDQIPTISFCCVLRKHLHHHSIFDKLLIDVVINGDKIKMCDDFLFYPHSNMLVEDVVVLVRIICCGDDKVSLASEWNHVEVKAKTIYGSHYASKKETCVEEVGIYVKELKHRREDIQFINPHKRKKLFHDFNLGSSFMASRRTHDITSNKDTYANSQEGVGDGAPIESLKLTCKRDGQFTSTSELKYEIAKVAYQGRLVDCEGAERFIQLMQRHNHNTDQSDLHARFLLLQVIKDSLAHCHEKTNEEDADFNCKFHVLFIKALPLLNKWLQDILKGKFHNIENDELVKRFLSASLEAMYKMVPVSLYQLQSFGVVKSVKLLLKHKSPHIWLKAESLINRWKFHLDAEEENSLASLLEEDPELSKTEIGGEKLKDDANHASSSSMSNAIVSRVVHVGERAIDSSNSQSKQDEAVTNEIDILLEKCIFRRDNSVVYKAELVLSLQGNSNSSAPDKIIAQSKQIDHNLSSRIIGRMDVVRISPPITIDRRLRRTSSLRTAITRSL	941

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto10g2398	941	ProSiteProfiles	TFIIS N-terminal domain profile.	703	786	IPR017923	-
	Sto10g2398	941	SUPERFAMILY	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	699	788	IPR035441	-
	Sto10g2398	941	Pfam	TFIIS helical bundle-like domain	742	780	IPR017923	-
	Sto10g2398	941	Gene3D	Ribonuclease Inhibitor	245	419	IPR032675	-
	Sto10g2398	941	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	59	456	IPR044974	GO:0006952
	Sto10g2398	941	Gene3D	Ribonuclease Inhibitor	75	244	IPR032675	-
	Sto10g2398	941	SUPERFAMILY	L domain-like	74	410	-	-
	Sto10g2398	941	PANTHER	NB-ARC DOMAIN PROTEIN	59	456	-	-
	Sto10g2398	941	Gene3D	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	641	785	IPR035441	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto10g2398	Sto-Chr10	34223710	34237304	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto10g2398	95	355	WRKY Transcription Factor Family	AT4G12020	33.088	3.80e-26	114

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	IWS1	Sto10g2398		Med26	7.4e-05	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto10g2398	-		-	ahf:112730546	358.992