LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sto10g2325	ATGGCCGACCACATCTGGGATTGGGATCTCTACGCCGTCGTCCGAGGCTACACCTACGCCGCCACCGCCTCCACCGCCGTCGCCGCCATCCCTCCACCTCCGGTAGTCCCCAATACGACGCCGTTTCACCATgaccccaccaccaccaccactctgTCTCCCTTGGCCACTCTGACCTTCAGAGAAGACCAAAACGACCCGTTTGCTTTCCCCAATCTCTCGCAACCTCCCCCACCGATCACCACCCAATCCCACCATACCCTCCAAGAGCTTCAGCAATTGCTCTTACCCACCGATCAAAACCACCAtcgtcatcttcatcttcaaaaTCAGATGAATCTGGAATTTCCCCAAAGTCAACCCGCCAATTCTGGGGTGAATTTAGTGAAGAAACAAGCTCAAGCTCAAGCACCCAGATCAAGGAAAAGGAAGGTCCAACTCAAGAAGATGGTGTGCCGCGTGACGGCAGAAAACGTCTCCACCGATTTGTGGGCGTGGCGGAAGAATTACTACCGATGCAGCAGCAATAAAGGCTGCGCTGCGAGGAAACAAGTGGAGCGGAGTGTGACTGACCCGGAAACGTTCGTCGTCACGTACACCGGCGACCACTCCCATCCACCGCCCACTCACCGGAACTCGCTCGCCGGAAGCACCCGGAGCAAGCCGTCGTCCACGGCGGCGGCGAAGGCGAAGGCCCATGCTGCTCAGGCCGGAGGCTCCGACCCGCCGGCTTGTCCAGAGAACAACGAAGAGGCTGCCGCCGAGGAGACCGAGTCCCCGGGCGAGTCCTACCCGAGCACCGAACCGGATTCGCAGAAGAGGTGGTCCGACGACGACGAAGAGATTATGATGATACCCAACATGTCTGCCATGACGGAAGATATCTTCTTGGGTCTCAATCCTTTCGGCGGCGGCGGTGAGTCTTCCGGTGGGTCGTCCCCGACGAGTCAACTCGGGTCCGTCCCTCATGACAGCGTCTCCGGCACCAGCCGGTTCAGCCCGGGTTAA	1008	0.5675	MADHIWDWDLYAVVRGYTYAATASTAVAAIPPPPVVPNTTPFHHDPTTTTTLSPLATLTFREDQNDPFAFPNLSQPPPPITTQSHHTLQELQQLLLPTDQNHHRHLHLQNQMNLEFPQSQPANSGVNLVKKQAQAQAPRSRKRKVQLKKMVCRVTAENVSTDLWAWRKNYYRCSSNKGCAARKQVERSVTDPETFVVTYTGDHSHPPPTHRNSLAGSTRSKPSSTAAAKAKAHAAQAGGSDPPACPENNEEAAAEETESPGESYPSTEPDSQKRWSDDDEEIMMIPNMSAMTEDIFLGLNPFGGGGESSGGSSPTSQLGSVPHDSVSGTSRFSPG	335

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sto10g2325	335	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	7	98	IPR044810	GO:0003700
	Sto10g2325	335	PANTHER	WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED	98	311	IPR044810	GO:0003700
	Sto10g2325	335	PANTHER	WRKY TRANSCRIPTION FACTOR 27-RELATED	98	311	-	-
	Sto10g2325	335	PANTHER	WRKY TRANSCRIPTION FACTOR 27-RELATED	7	98	-	-
	Sto10g2325	335	MobiDBLite	consensus disorder prediction	119	142	-	-
	Sto10g2325	335	ProSiteProfiles	WRKY domain profile.	155	208	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Sto10g2325	335	MobiDBLite	consensus disorder prediction	306	335	-	-
	Sto10g2325	335	Gene3D	WRKY domain	130	209	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Sto10g2325	335	MobiDBLite	consensus disorder prediction	205	225	-	-
	Sto10g2325	335	SUPERFAMILY	WRKY DNA-binding domain	155	208	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Sto10g2325	335	MobiDBLite	consensus disorder prediction	296	335	-	-
	Sto10g2325	335	MobiDBLite	consensus disorder prediction	197	278	-	-
	Sto10g2325	335	Pfam	WRKY DNA -binding domain	167	206	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Sto10g2325	335	SMART	WRKY_cls	160	207	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Sto10g2325	335	MobiDBLite	consensus disorder prediction	119	134	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sto10g2325	Sto-Chr10	33474177	33475497	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sto10g2325	1	316	WRKY Transcription Factor Family	AT4G01250	34.535	1.40e-43	150

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Sto10g2325		WRKY	1.8e-12	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sto10g2325	K13425		-	qsu:111994510	166.007